Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq503 145 6e-30 seq8469 96.9 3e-15 seq937 96.9 3e-15 seq2645 86.0 5e-12 >seq503 Length=134583 Score = 145 bits (160), Expect = 6e-30 Identities = 208/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 || || ||| ||||||||| |||||| | || ||||| ||||| | |||||||||||| Sbjct 11386 GATATTTGGTTAATGTACAAGAAAGCAAAAGCTTCATTCTGGACGGTCGAAGAAGTTGAT 11327 Query 43787 TTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCT 43846 | | || ||| || |||| ||| | | || | | || | | | || || ||| Sbjct 11326 CTCTCGAAGGACCTACCACACTGGGAATCTCTCAAGCGGGAGGAGAGAAAATTCATCTCT 11267 Query 43847 TTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGG 43906 |||||||| || || || || |||||||| || || || ||||| | || || Sbjct 11266 CACGTTTTGGCTTTCTTCGCGGCCAGCGACGGCATTGTAAACGAAAACCTCCTTCAGCGT 11207 Query 43907 TTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATA 43966 ||| | ||||| ||||| ||| || || ||||| ||||| |||||||| | |||| Sbjct 11206 TTTACTCAAGAGGTTCAGGTACTTGAGGCGCGATGCTTTTACGGGTTTCAGTTCACCATG 11147 Query 43967 GAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || ||||| |||||||||||||| | |||| || || ||||||| ||| Sbjct 11146 GAGAACATTCACTCGGAAATGTACAGCTTGTTGATCGACACCTACATCAGAGA 11094 Score = 131 bits (144), Expect = 1e-25 Identities = 165/222 (74%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 44039 TTGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAA 44097 |||||||| || || || || ||||| ||| | ||||| || || |||||||| || || Sbjct 10941 TTGTTTAACGCCATTGAGACGCTACCTTGCG-TCAAACAAAAGGCTGACTGGGCGCTAAA 10883 Query 44098 ATGGATAAATTC--AAATGATT-CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGA 44154 ||||| ||||| ||| | | | || || || | || || ||||| | ||||| Sbjct 10882 CTGGATTAATTCGGAAACGTCCACCTACGGTGAGAGAGTCGTGGCCTTTGCCGCGGTGGA 10823 Query 44155 AGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGAT 44214 || |||||||| || ||||| || || |||| |||||| | || ||||| || ||||| Sbjct 10822 GGGGATTTTCTTCTCGGGATCTTTCGCCTCCATCTTTTGGCTGAAAAAACGTGGGTTGAT 10763 Query 44215 GCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 |||||| ||||||||||| |||||| | || || || ||||| Sbjct 10762 GCCTGGCTTGACGTTTTCTAATGAGCTGATTAGCCGCGATGA 10721 >seq8469 Length=53876 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 44040 TGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||| ||||| || || || ||||| ||| | || || || || |||||||| || || Sbjct 18105 TGTTCAATGCCATTGAGACCCTACCTTGCG-TCAAGCAGAAGGCTGACTGGGCGCTGAAC 18047 Query 44099 TGGATAAATTC--AAATGATT-CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| || || | ||| | | || || | |||| || || || | |||||| Sbjct 18046 TGGATCAACTCGGACATGCCCACCTACGGCGAGAGGGTTGTGGCCTTCGCTGCTGTGGAG 17987 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 ||||||||||| || || || || || |||| || ||| | ||||| | || ||||| Sbjct 17986 GGCATTTTCTTCTCGGGGTCCTTCGCCTCCATCTTCTGGCTGAAGAAGAGGGGACTGATG 17927 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 | || |||||||| || |||||| | || ||||| ||||| Sbjct 17926 CACGGCTTGACGTTCTCCAATGAGCTGATCAGTCGCGATGA 17886 >seq937 Length=97168 Score = 96.9 bits (106), Expect = 3e-15 Identities = 157/221 (71%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 44040 TGTTTAATGCGATAGAAACAGTACCT-GCGATTAAACATAAAGCAGACTGGGCCCTTAAA 44098 |||| ||||| || || || ||||| ||| | || || || || |||||||| || || Sbjct 93519 TGTTCAATGCCATTGAGACCCTACCTTGCG-TCAAGCAGAAGGCTGACTGGGCGCTGAAC 93461 Query 44099 TGGATAAATTC--AAATGATT-CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAA 44155 ||||| || || | ||| | | || || | |||| || || || | |||||| Sbjct 93460 TGGATCAACTCGGACATGTCCACCTACGGCGAGAGGGTTGTGGCCTTCGCTGCTGTGGAG 93401 Query 44156 GGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 ||||||||||| || || || || || |||| || ||| | ||||| | || ||||| Sbjct 93400 GGCATTTTCTTCTCGGGCTCCTTCGCCTCCATCTTCTGGCTGAAGAAGAGGGGACTGATG 93341 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 | || |||||||| || |||||| | || ||||| ||||| Sbjct 93340 CACGGCTTGACGTTCTCCAATGAGCTGATCAGTCGCGATGA 93300 >seq2645 Length=46952 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/135 (75%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTT 44134 ||||| ||||||||| || |||||| || | || || || |||||||| |||| Sbjct 14677 AAAGCTGACTGGGCCATTCGATGGATTCATGCCAAGGAAGCTACATTTGGAGAGAGACTC 14736 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 || || || || | ||||||||||| ||||| || ||||| ||||| || ||||||||| Sbjct 14737 GTTGCATTCGCTGCAGTGGAAGGCATCTTCTTCTCGGGATCATTTGCAGCTATATTTTGG 14796 Query 44195 TTAAAGAAACGAGGT 44209 | | ||| ||||| Sbjct 14797 CTGAGGAA--GAGGT 14809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397164473848915