Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq47842 93.3 1e-13 seq6406 93.3 1e-13 >seq47842 Length=15337 Score = 93.3 bits (102), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 14/244 (6%) Strand=Plus/Plus Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACA---TTGAACGGTTT 255094 || || || || || |||||||||||||||| ||||||||||||| |||| | Sbjct 10356 CGTCCCGGTGCCTTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGA------T 10409 Query 255095 TTACTGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACC 255151 || ||| | | | |||| ||||| ||||||| | ||||||||| ||| | | Sbjct 10410 TTCCTGGACTGCAAGAAGAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTAC 10469 Query 255152 GCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTC 255211 | ||||| || ||||| ||| | |||||||| | || | |||| |||| Sbjct 10470 GGACTCTGGATACCAGACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTG 10529 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTC-GACTCTTGGGGTGACGAGTTTGAAAAACT 255270 ||||| |||||| | |||| | || ||| || | |||||||| |||||||| || || Sbjct 10530 ATGTGCCCCAAC-GAGTGCCCAGGCTTGTCGGATTGCTGGGGTGAAGAGTTTGACAAGCT 10588 Query 255271 GTAT 255274 |||| Sbjct 10589 GTAT 10592 >seq6406 Length=55272 Score = 93.3 bits (102), Expect = 1e-13 Identities = 169/244 (69%), Gaps = 14/244 (6%) Strand=Plus/Plus Query 255038 CGCCCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACA---TTGAACGGTTT 255094 || || || || || |||||||||||||||| ||||||||||||| |||| | Sbjct 29073 CGTCCCGGTGCCTTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGA------T 29126 Query 255095 TTACTGCTGTCCGACAAGA---CCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACC 255151 || ||| | | | |||| ||||| ||||||| | ||||||||| ||| | | Sbjct 29127 TTCCTGGACTGCAAGAAGAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTAC 29186 Query 255152 GCTGTCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGACCTGGAGCCTC 255211 | ||||| || ||||| ||| | |||||||| | || | |||| |||| Sbjct 29187 GGACTCTGGATACCAGACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTG 29246 Query 255212 ATGTGTCCCAACTTATCGCCCGGTCTAGTC-GACTCTTGGGGTGACGAGTTTGAAAAACT 255270 ||||| |||||| | |||||| || ||| || | |||||||| |||||||| | || Sbjct 29247 ATGTGCCCCAAC-GAGTGCCCGGGCTTGTCGGATTGCTGGGGTGAAGAGTTTGACACGCT 29305 Query 255271 GTAT 255274 |||| Sbjct 29306 GTAT 29309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587111242548435