Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq49 262 1e-64 seq4379 138 3e-27 seq3742 138 3e-27 seq6568 114 4e-20 seq9165 87.8 5e-12 seq2483 86.0 2e-11 >seq49 Length=210639 Score = 262 bits (290), Expect = 1e-64 Identities = 725/1102 (66%), Gaps = 16/1102 (1%) Strand=Plus/Plus Query 349547 TCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACT 349606 || ||||| | ||||| |||||||| | || || |||||| | || | | || || Sbjct 23537 TCCATGGTGCTGGTTAAGATGAAGGAGACAGCCGAGGCATATCTTGGGCATAAGGTTACA 23596 Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 |||||||| || ||||||||||| || || |||||| ||||| | || || |||||| Sbjct 23597 GATGCTGTCATCACTGTACCAGCATACTTCAATGATTCCCAGAGACAAGCTACCAAAGAT 23656 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 || || ||||| || | |||||||| || || || ||||||||||| ||||| || Sbjct 23657 GCCGGAGTGATTGCTGGTCTCAATGTTCTCAGGATCATCAATGAACCCACAGCTGCCGCC 23716 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAA---GaaaaaaaTATTCTTATTTTTGAT 349783 | || || || || || |||| | || ||| || || || |||| ||||||||| Sbjct 23717 TTGGCCTACGGACTGGACAAAAAG-CTG--CAAGGGGAGAAGCATGTTCTGATTTTTGAT 23773 Query 349784 TTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTT 349843 |||| ||||| || |||||||| || | || | |||| || || || ||||| ||| Sbjct 23774 CTAGGAGGTGGCACCTTTGATGTGTCTGTCCTGGCTATTGAGGATGGCATGTTTGAGGTT 23833 Query 349844 AAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCG 349903 | || || || ||||| ||||||||||| || || ||||| |||||||| || Sbjct 23834 CTCTCCACGGCCGGCGATACTCATCTTGGTGGTGAGGACTTTGACAATCGTCTTGTCAAC 23893 Query 349904 CATTTTGTTAAAGAATTTAAGCGTCAAGCTAAAATTGATATTGGAGA-TAATCCTAGAGC 349962 || | | | |||||| ||| | ||| | || | ||| | ||||| ||| | Sbjct 23894 CACCTGGCTGGAGAATTCAAGAG-GAAGTTTAAGAAGGACTTGACCACAAATCCAAGATC 23952 Query 349963 AATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCA 350022 | ||||| || || || || ||| | || ||| | | | ||| | || || Sbjct 23953 CCTCCGTCGACTGAGGACAGCTGCTGAGAGAGCCAAGAGAACTCTCTCAAGCAGCACTCA 24012 Query 350023 AACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACG 350082 | | ||||||| | || ||||| ||| || | || |||| |||| || | || Sbjct 24013 AGCAAGTATTGAAGTGGACTCTCTCTTTGAAGGGATTGACTTCTACACATCCATCTCCCG 24072 Query 350083 TGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAG--AGCAACAATGGATCCTGTGGAA 350140 ||||| ||||| || ||||| ||||| || | || | | | || || || Sbjct 24073 AGCTCGCTTTGAGGAGCTATGTGCTGATCTGTTCCGTCAGTGCC--TTAACCCAGTAGAG 24130 Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGT 350200 | ||| ||||||||| | ||| |||| |||||||| || || | ||||| Sbjct 24131 CGGGCATTGGTGGATGCAAAAGTTGACAAGAATCGCATTGATGAGGTTGTGCTGGTTGGA 24190 Query 350201 GGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA 350260 || || ||||| || || || |||| || | | || | | || || ||||| Sbjct 24191 GGCTCCACACGAATCCCCAAGATTCAGAAGCTGTTGCAAGATTACCTCAACGGAAAAGA- 24249 Query 350261 CCTT--CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCAT 350318 ||| ||||| || ||||||||||| || || || ||||| |||||||| || ||| Sbjct 24250 -CTTGAACAGATCCATCAATCCAGATGAGGCAGTAGCTTATGGAGCTGCTGTACAAGCAG 24308 Query 350319 CTATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTC 350378 | || || ||| | ||||| | | | | ||| | | || | ||||| |||| Sbjct 24309 CCATCTTGAGTGGTGACCAGAGTGCAGAGGTCAAAGATGTTCTTCTTGTGGATGTTACTC 24368 Query 350379 CACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATA 350438 | ||||| ||||| | || ||| |||| | | ||||| || || ||||| | Sbjct 24369 CTCTTTCACTTGGCATTGAGACTGCTGGGGGTATCATGACCAAACTGATCGAGAGAAACA 24428 Query 350439 GTACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGG 350498 | | || || || | ||| | || || | || | ||| || || ||||| || | Sbjct 24429 GCCGCATCCCAACCAAGACATCCAAGACATTCACCACCTATGCTGACAACCAGCCTGCAG 24488 Query 350499 TAACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAG 350558 | || || ||||| | |||||| ||| | ||| || ||||| || ||| || || Sbjct 24489 TTACGATCCAAGTCTATGAAGGAGAAAGAGCTATGACAAAAGACAACAATCGTCTGGGCA 24548 Query 350559 AATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTT 350618 ||| ||| || || || ||| ||| | || || || ||||||||||||| | Sbjct 24549 TCTTTGAGCTAGCTGGCATCCCTCCAGCTCCTCGCGGTGTACCCAAGATTGAAGTCTCCT 24608 Query 350619 TCGATATTGATTCAAATGGTAT 350640 | || |||||| | || ||||| Sbjct 24609 TAGACATTGATGCTAACGGTAT 24630 >seq4379 Length=69586 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || || |||||||| || || || || || Sbjct 49694 CATACCACCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 49753 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || |||||||| ||||| ||||| ||||| || || Sbjct 49754 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGG 49813 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| || || || || ||||| ||||| || || | ||| || || Sbjct 49814 TGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 49873 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 49874 GACCTCAAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 49924 Score = 131 bits (144), Expect = 5e-25 Identities = 170/235 (72%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | || || || |||||||| || || || | Sbjct 40067 TTTGCATACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGT 40126 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || |||||||| || || ||||| || ||||| ||||| ||||| | Sbjct 40127 AGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGT 40186 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || || || || ||||| || || || || ||||| ||||| || || | ||| | Sbjct 40187 CTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGG 40246 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || || | ||||| || || || || || || || |||||||| Sbjct 40247 GCTCGACCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 40301 Score = 107 bits (118), Expect = 6e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | ||||| | || || || |||||||| || || || | Sbjct 39425 TTTGCATACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGT 39484 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | ||||| | || || |||||||| || || ||||| || ||||| ||||| ||||| | Sbjct 39485 AGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGT 39544 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 | || || || || ||||| || || || || || || ||||| || || Sbjct 39545 CTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGAT 39593 Score = 105 bits (116), Expect = 2e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || || |||||||| || || || || || Sbjct 39843 CATACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTC 39902 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || || | ||||| || ||| | ||||| || || Sbjct 39903 AGACAGGGTGCGGCCATCTTCCAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGG 39962 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || || || || || || || || || ||||| | || | ||| ||| || Sbjct 39963 TGGGATGCCCTCGTTGTCTTGGATCTTGGCCTTGACATTCTTGATGGTGTCACTTGGCTC 40022 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| |||| ||||| || || | || || || || || ||||| Sbjct 40023 GACCTCAAGGGTAATGGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 40073 >seq3742 Length=77992 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || || |||||||| || || || || || Sbjct 33250 CATACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTC 33191 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || ||||| || ||||| ||||| ||||| || || Sbjct 33190 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGG 33131 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| || || ||||| ||||| ||||| || || | ||| || || Sbjct 33130 TGGGATGCCCTCTTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 33071 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || || |||||||| Sbjct 33070 GACCTCAAGAGTGATGGTCTTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || || |||||||| || || || || || Sbjct 33022 CATACCACCACGCAGACGGAGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTC 32963 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || |||||||| || || ||||| |||||||| ||||| ||||| || || Sbjct 32962 AGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGG 32903 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 || || || ||||| || || || || ||||| ||||| || || | ||| || || Sbjct 32902 TGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTC 32843 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || | ||||| || || || || || || || |||||||| Sbjct 32842 GACCTCGAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 32792 >seq6568 Length=53416 Score = 114 bits (126), Expect = 4e-20 Identities = 233/346 (67%), Gaps = 0/346 (0%) Strand=Plus/Minus Query 349547 TCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACT 349606 || ||||| | || || |||||||| | || || || ||| | || | | || | Sbjct 37332 TCCATGGTCCTGGTCAAGATGAAGGAGGTAGCCGAGGCTTATCTGGGCCAGAAGGTCAAG 37273 Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 ||||| || | || || || || || || || || ||||| | || || || ||| Sbjct 37272 GATGCAGTGGTGACCGTGCCTGCGTACTTCAACGACTCCCAGAGACAGGCTACCAAGGAT 37213 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 |||||| ||| || || | ||||| || || || || ||||| || || || || || Sbjct 37212 GCTGGCGTCATCGCAGGACTGAATGTCCTCAGGATCATCAATGAGCCAACAGCAGCTGCT 37153 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 |||| || || |||||||| | | | |||| | || | || || || || | Sbjct 37152 CTTGCCTACGGACTTGATAAGAAGCTCAAGGGAGAACAGAACGTGCTCATCTTCGACATG 37093 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || || || || || ||||| || | || || | || || ||| | ||||| || ||| Sbjct 37092 GGAGGCGGCACCTTCGATGTGTCCATCCTGACTATCGATGATGGAGTCTTTGAGGTGAAA 37033 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATC 349892 | || ||||| || || || |||||||||||||| ||||| |||| Sbjct 37032 TCCACGGCTGGGGACACTCACCTTGGTGGAGAAGACTTTGACAATC 36987 >seq9165 Length=26699 Score = 87.8 bits (96), Expect = 5e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 235876 GTCGTTCAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGG 235935 ||| | || ||| ||||||| ||| |||| ||||||| |||||||||||||||||||||| Sbjct 1731 GTCTTGCAGTAT-GGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGG 1674 Query 235936 TACCGGGATCAAAACCC 235952 |||||||||| | |||| Sbjct 1673 TACCGGGATCGATACCC 1657 >seq2483 Length=139881 Score = 86.0 bits (94), Expect = 2e-11 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 75929 GGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACCGGGATCGAT 75987 Query 235949 ACCCAGCATC-TCCAT 235963 |||| | ||| ||||| Sbjct 75988 ACCC-GGATCTTCCAT 76002 Score = 84.2 bits (92), Expect = 7e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 75756 GGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACCGGGATCGAT 75814 Query 235949 ACC 235951 ||| Sbjct 75815 ACC 75817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514085995381949