Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6406 131 2e-25 seq47842 127 2e-24 seq503 89.7 6e-13 >seq6406 Length=55272 Score = 131 bits (144), Expect = 2e-25 Identities = 154/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 79317 ATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAAC 79376 ||| | || |||||||||||||| |||||||||||| |||||| | || | ||| || Sbjct 29279 ATCCGACAAGCCCGGGCACTCGTTGGGGCACATCAGGCACCAGTCTTGGTTCCCCTCCAC 29220 Query 79377 CTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCT 79435 | |||||| ||||| || ||||| || |||| ||||||||||||| ||| || Sbjct 29219 GCGCCTCATGAACAGGTCTGGTATCCAGAGT-CCGTAGAAGAGGTCGCGGGCCCGCTGCT 29161 Query 79436 CCTCGTCGCCCTGGTTC-AGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 |||| | ||| |||||| |||| || || || || | ||||||||||||||| ||| Sbjct 29160 CCTCCTTGCCGTGGTTCTTCTTGCAG-TCCAGGAAATCAAAGATGTCGGCGTGCCAGGGC 29102 Query 79495 TCCAGATAGATGGCGAACGAACC 79517 ||||| |||||||| || | ||| Sbjct 29101 TCCAGGTAGATGGCAAAGGCACC 29079 Score = 109 bits (120), Expect = 6e-19 Identities = 140/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT- 19551 || ||||||||||| ||||| |||||||| ||| || | |||||||| || |||| Sbjct 29085 TTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGA-CTGCAAGAA 29143 Query 19552 GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGG 19610 |||||| || | |||||| ||| |||||||||||| |||| | | ||||| || | Sbjct 29144 GAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGAC-TCTGGATACCAG 29202 Query 19611 ACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAAT 19670 |||| |||||| | || ||| | || |||| ||| |||||||||||| |||| | Sbjct 29203 ACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTGATGTGCCCCAACGAGT 29262 Query 19671 GCCCTGGC 19678 |||| ||| Sbjct 29263 GCCCGGGC 29270 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 |||||||||||| || |||||| || || ||||||| ||| ||||||||||||| Sbjct 30245 CTCGTCCGGGCTGGAGTACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCC 30186 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| |||||| ||||| ||| ||||| || ||||| ||||||||| || || Sbjct 30185 AAGGTTCTGCTGGTTACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACC 30126 Query 79200 GGTCTC 79205 |||||| Sbjct 30125 GGTCTC 30120 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| || |||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 27908 AGCTGTTTCCTGTTGACTATGAGTGATGACAGCATTGAGGGGATCTACGACACGCTGAAG 27967 Query 19313 GAGTGCGCGCACATCTCCAAG 19333 ||||||| | |||||||||| Sbjct 27968 CAGTGCGCCCTCATCTCCAAG 27988 Score = 96.9 bits (106), Expect = 4e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 20603 GATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGC 20662 || || ||| || || |||||| | |||| ||| || ||||| ||| | ||||||| | Sbjct 34381 GAAATACCCAAGGACACCAAGGAACTATACAAGACAGTCTGGGAGATCTCCCAGAAGAAC 34440 Query 20663 ATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAA 20718 || || | ||||| ||||||||||| |||||||| |||||| |||||||||||| Sbjct 34441 ATTCTCAAGATGGCAGCCGATCGCGGTGCCTACATTGACCAGAGCCAGTCGCTCAA 34496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||||||||| | | ||||||||| |||| |||||| || || || Sbjct 33181 GTAGATGTTGCTGGTGTACGGCTCAATGGACTCGTTGTTGCCCAGGATCTGAGCCGTGGA 33122 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGA 78621 |||||| |||||||| || | ||| ||| Sbjct 33121 GGCGGTAGGCATGGGGGCCAGCAGGAGA 33094 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 20393 GCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCG 20452 || |||||||| |||||||| || || |||||| |||| ||||||||| | | |||||| Sbjct 33104 GCCCCCATGCCTACCGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCCATTGAGCCG 33163 Query 20453 TACACGACCAACATCTAC 20470 ||||| | |||||||||| Sbjct 33164 TACACCAGCAACATCTAC 33181 >seq47842 Length=15337 Score = 127 bits (140), Expect = 2e-24 Identities = 153/203 (75%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 79317 ATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAAC 79376 ||| | || ||| |||||||||| |||||||||||| |||||| | || | ||| || Sbjct 10562 ATCCGACAAGCCTGGGCACTCGTTGGGGCACATCAGGCACCAGTCTTGGTTCCCCTCCAC 10503 Query 79377 CTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCT 79435 | |||||| ||||| || ||||| || |||| ||||||||||||| ||| || Sbjct 10502 GCGCCTCATGAACAGGTCTGGTATCCAGAGT-CCGTAGAAGAGGTCGCGGGCCCGCTGCT 10444 Query 79436 CCTCGTCGCCCTGGTTC-AGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 |||| | ||| |||||| |||| || || || || | ||||||||||||||| ||| Sbjct 10443 CCTCCTTGCCGTGGTTCTTCTTGCAG-TCCAGGAAATCAAAGATGTCGGCGTGCCAGGGC 10385 Query 79495 TCCAGATAGATGGCGAACGAACC 79517 ||||| |||||||| || | ||| Sbjct 10384 TCCAGGTAGATGGCAAAGGCACC 10362 Score = 109 bits (120), Expect = 6e-19 Identities = 140/188 (74%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCT- 19551 || ||||||||||| ||||| |||||||| ||| || | |||||||| || |||| Sbjct 10368 TTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGA-CTGCAAGAA 10426 Query 19552 GAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGG 19610 |||||| || | |||||| ||| |||||||||||| |||| | | ||||| || | Sbjct 10427 GAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGAC-TCTGGATACCAG 10485 Query 19611 ACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAAT 19670 |||| |||||| | || ||| | || |||| ||| |||||||||||| |||| | Sbjct 10486 ACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTGATGTGCCCCAACGAGT 10545 Query 19671 GCCCTGGC 19678 |||| ||| Sbjct 10546 GCCCAGGC 10553 Score = 93.3 bits (102), Expect = 5e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 |||||| || || || |||||| || || ||||||| ||| ||||||||||||| Sbjct 11532 CTCGTCTGGACTGGAGTACTCGATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCC 11473 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| |||||| ||||| ||| ||||| || ||||| ||||||||| || || Sbjct 11472 AAGGTTCTGCTGGTTACTCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACC 11413 Query 79200 GGTCTC 79205 |||||| Sbjct 11412 GGTCTC 11407 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 19253 AGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAG 19312 ||||||||||| | |||||| ||||||||||||||||| |||||||| ||||| || Sbjct 8827 AGCTGTTTCCTGTTAACTATGAGTGATGACAGCATTGAGGGGATCTACGACACGCTGAAA 8886 Query 19313 GAGTGCGCGCACATCTCCAAG 19333 ||||||| | |||||||||| Sbjct 8887 CAGTGCGCCCTCATCTCCAAG 8907 >seq503 Length=134583 Score = 89.7 bits (98), Expect = 6e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||||||||| | ||||||| |||||| |||||||||||||||| |||||||||||| Sbjct 10178 AACCCTTTCGATTTCATGGAGAACATCTCTCTGGAAGGGAAGACCAATTTCTTTGAGAAG 10119 Query 60405 CGGGTCGGGGATTA 60418 ||||||| || || Sbjct 10118 AGGGTCGGCGAGTA 10105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548112151649520