Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq47842 107 2e-18 seq14948 104 3e-17 seq6406 102 9e-17 seq8582 98.7 1e-15 seq503 84.2 2e-11 >seq47842 Length=15337 Score = 107 bits (118), Expect = 2e-18 Identities = 163/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT- 53628 || ||||||||||| ||||| |||||||||||||| | || || || || |||| Sbjct 10368 TTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGA-CTGCAAGAA 10426 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 ||| || || | || ||| ||| ||| ||||| || ||| | || ||||| || | Sbjct 10427 GAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGA-CTCTGGATACCAG 10485 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||| |||||| | || | || |||| |||||||||||| ||||||| Sbjct 10486 ACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTGATGTGCCCCAACGAGT 10545 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTAT 53794 |||| ||| | || | || ||||| |||||| || || ||||| Sbjct 10546 GCCCAGGCTTGTCGGATTGCTGGGGTGAAGAGTTTGACAAGCTGTAT 10592 Score = 82.4 bits (90), Expect = 8e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 55500 TGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGC 55559 |||| || ||||| ||||| || |||||||||||| ||||||| |||||| | | |||| Sbjct 14079 TGGCCCCCATGCCCACCGCCTCCACGGCTCAGATCCTGGGCAATAACGAGTCCATTGAGC 14138 Query 55560 CGTACACGACCAACATCTAC 55579 | ||||| | |||||||||| Sbjct 14139 CATACACCAGCAACATCTAC 14158 >seq14948 Length=12203 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| || || ||||| || ||||||||| |||||||| Sbjct 11212 GTGAAGATGTAACGGGGGCTGGCAGCGTCTTTGCCGCCGTACAGCCGCGTACCAAACTGA 11271 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||| || | ||||||| ||||||| | ||||||||||| || | Sbjct 11272 CCAATGGGCTGCAAGAGATTCAAGTTGTTGCTGCCCACGTAGTTCTGAGCCAAGTTGATG 11331 Query 152149 ATCGTGC 152155 || |||| Sbjct 11332 ATGGTGC 11338 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| ||||| || ||||| || || |||||||| || || Sbjct 11212 GTGAAGATGTAACGGGGGCTGGCAGCGTCTTTGCCGCCGTACAGCCGCGTACCAAACTGA 11271 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGA 117422 ||| | |||| |||||| |||| ||||||| |||||| |||| ||||||||||||| Sbjct 11272 CCAATGGGCTGCAAGAGATTCAAGTTGTTGCTGCCCACGTAGTTCTGAGCCAAGTTGA 11329 >seq6406 Length=55272 Score = 102 bits (112), Expect = 9e-17 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCT- 53628 || ||||||||||| ||||| |||||||||||||| | || || || || |||| Sbjct 29085 TTTGCCATCTACCTGGAGCCCTGGCACGCCGACATCTTTGATTTCCTGGA-CTGCAAGAA 29143 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGG 53687 ||| || || | || ||| ||| ||| ||||| || ||| | || ||||| || | Sbjct 29144 GAACCACGGCAAGGAGGAGCAGCGGGCCCGCGACCTCTTCTACGGA-CTCTGGATACCAG 29202 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||| |||||| | || | || |||| |||||||||||| ||||||| Sbjct 29203 ACCTGTTCATGAGGCGCGTGGAGGGGAACCAAGACTGGTGCCTGATGTGCCCCAACGAGT 29262 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTAT 53794 |||| ||| | || | || ||||| |||||| || | ||||| Sbjct 29263 GCCCGGGCTTGTCGGATTGCTGGGGTGAAGAGTTTGACACGCTGTAT 29309 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 55500 TGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGAGC 55559 |||| || ||||| ||||| || |||||||||||| |||||||||||||| | | |||| Sbjct 33102 TGGCCCCCATGCCTACCGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCCATTGAGC 33161 Query 55560 CGTACACGACCAACATCTAC 55579 ||||||| | |||||||||| Sbjct 33162 CGTACACCAGCAACATCTAC 33181 >seq8582 Length=42930 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| |||||| || || || ||||| ||||||||| |||||||| Sbjct 24946 GTGAAGATGTAACGGGGGCTGGCAGCGTCTTTACCACCGTACAGCCGCGTACCAAACTGA 24887 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||| || | ||||||| ||||||| | ||||| ||||| || | Sbjct 24886 CCAATGGGCTGCAAGAGATTCAAGTTGTTGCTGCCCACGTAGTTCTGTGCCAAGTTGATG 24827 Query 152149 ATCGTGC 152155 || |||| Sbjct 24826 ATGGTGC 24820 >seq503 Length=134583 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||| ||| ||||| || |||||||||||||||| |||||||||||||| Sbjct 10105 TACTCGCCGACCCTCTTCTCAAAGAAATTGGTCTTCCCTTCCAGAGAGATGTTCTCCATG 10164 Query 74523 CAGTCGAAAGGGTT 74536 | ||||||||||| Sbjct 10165 AAATCGAAAGGGTT 10178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546804336243400