Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4379 158 1e-33 seq3742 152 6e-32 seq9089 107 2e-18 seq4762 102 9e-17 seq6406 96.9 4e-15 seq47842 93.3 5e-14 seq14948 84.2 2e-11 >seq4379 Length=69586 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || ||||||||||| ||| | || Sbjct 49924 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 49865 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 49864 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 49805 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 49804 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 49745 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || ||||| Sbjct 49744 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGTGG 49698 Score = 154 bits (170), Expect = 2e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || ||||||||||| ||| | || Sbjct 39289 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 39230 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 39229 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39170 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 39169 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39110 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || || ||||| || || | || | ||||| || || || || Sbjct 39109 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGAGGGCA 39060 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| | || || ||||| ||||| |||||||| ||| || || Sbjct 40073 ATGCAAATCTTCGTCAAGACCTTGACGGGTAAGACCATTACCCTTGAGGTCGAGCCAAGT 40014 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 40013 GACACCATCAAGAATGTCAAGGCCAAGATCCAAGACAACGAGGGCATCCCACCAGACCAG 39954 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||| ||| |||||||| | | ||| || || |||| || ||||| | ||||| || Sbjct 39953 CAGCATCTGATTTTTGCCGTAATGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39894 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || ||||| Sbjct 39893 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 39847 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 40301 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 40242 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 40241 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 40182 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 40181 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 40122 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || ||||| Sbjct 40121 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 40075 Score = 147 bits (162), Expect = 2e-30 Identities = 150/196 (77%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| |||||||||||||| ||| || || Sbjct 39845 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATTACTCTTGAGGTCGAGCCAAGT 39786 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 39785 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39726 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 39725 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39666 Query 27586 GTCCAAAAGGAATCCA 27601 |||| || || |||| Sbjct 39665 ATCCAGAAAGAGTCCA 39650 Score = 125 bits (138), Expect = 8e-24 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| ||||| |||||||| ||| || || Sbjct 49696 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACCATTACCCTTGAGGTCGAGCCAAGT 49637 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 49636 GACACCATCAAGAATGTCAAGGCCAAGATCCAAGACAACGAGGGCATCCCACCAGACCAG 49577 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| ||| |||||||| | | ||| || || |||| || ||||| | ||||| || Sbjct 49576 CAGCATCTGATTTTTGCCGTAATGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 49518 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || || ||||| ||||| || || ||||||||||||||||| || Sbjct 39587 AATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATC 39528 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| || || |||| || ||||| | ||||| || |||| || || Sbjct 39527 TTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACATCCAGAAAGAG 39468 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || | || | ||||| || ||||| Sbjct 39467 TCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 39433 >seq3742 Length=77992 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 32792 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 32851 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 32852 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 32911 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 32912 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 32971 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || ||||| Sbjct 32972 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 33018 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || || ||||| || ||||||||||| ||| | || Sbjct 33020 ATGCAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGAGCCCAGT 33079 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || ||||| || ||||| ||||| || || ||||||||| Sbjct 33080 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33139 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 33140 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33199 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | || | ||||| || ||||| Sbjct 33200 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGG 33246 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || ||||| || || || |||||||| ||| | || Sbjct 33248 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 33307 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 33308 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33367 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 33368 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33427 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| || || ||||| || || || || | ||||| || || || || Sbjct 33428 ATCCAGAAAGAGTCCACCCTCCACCTGGTTCTCCGTCTGCGTGGAGGGCA 33477 >seq9089 Length=72386 Score = 107 bits (118), Expect = 2e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 27449 TTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGG 27508 || |||||||| | | || | ||| | ||| | ||||| || || ||||||||||| | Sbjct 51985 TTTAGGTTGAGCCCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAG 52044 Query 27509 GAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTA 27568 | || || |||||||||||| | || || ||||| || ||||| || ||||| | || | Sbjct 52045 GCATCCCGCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCA 52104 Query 27569 CCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCG 27628 |||| | ||||| || |||| ||||| ||||| || || || || || | || || | Sbjct 52105 CCCTCTCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGAGGCTGCGGG 52164 Query 27629 GTGG 27632 | || Sbjct 52165 GCGG 52168 >seq4762 Length=92317 Score = 102 bits (112), Expect = 9e-17 Identities = 131/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 |||||||| | | || | ||| | ||| | ||||| || || ||||||||||| || | Sbjct 80783 AGGTTGAGCCCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCA 80842 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || |||||||||||| | || || || || || ||||| || ||||| | || |||| Sbjct 80843 TCCCGCCAGACCAGCAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCC 80902 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | | ||||| || |||| ||||| ||||| || || || || || | || || || | Sbjct 80903 TCTCCGACTACAACATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGAGGCTGCGGGGCG 80962 Query 27632 G 27632 | Sbjct 80963 G 80963 >seq6406 Length=55272 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||||| || || ||||||| ||| | |||| || || || ||||| | |||||| Sbjct 30228 ACTCGATAATCTCGGTGCACAGGTTACTACACTTGATGGTGCCAAGGTTCTGCTGGTTAC 30169 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || || ||||| ||||||||||||||||||||| ||| | || Sbjct 30168 TCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGCCT 30109 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 | |||||| | ||| | | | ||||||| | ||||||| |||| |||||| Sbjct 30108 GCACGATGGCCTGCCAGAGATACTGAGCCTTGATCTTCTTGCGGTATTTCCCTTCG 30053 >seq47842 Length=15337 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||||| || || ||||||| ||| |||| || || || ||||| | |||||| Sbjct 11515 ACTCGATAATCTCAGTGCACAGGTTACTGCACTTGATGGTGCCAAGGTTCTGCTGGTTAC 11456 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| |||||| || || ||||| ||||||||||||||||||||| ||| | || Sbjct 11455 TCTTACTGTTGCAGGCATCTTTGTACAGCATGTACGGGGTACCGGTCTCTGTCTGGGCCT 11396 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCG 81123 | |||||| | ||| | | | ||||||| | ||||||| |||| |||||| Sbjct 11395 GCACGATGGCCTGCCAGAGATACTGAGCCTTGATCTTCTTGCGGTATTTCCCTTCG 11340 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 ||||||||||||| |||||||||||| |||||| || ||| || | |||||| Sbjct 10551 CTGGGCACTCGTTGGGGCACATCAGGCACCAGTCTTGGTTCCCCTCCACGCGCCTCATGA 10492 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| || |||||||| || ||| ||||||||| ||| |||||| | || | Sbjct 10491 ACAGGTCTGGTATCCAGAGTCCGTAGAAGAGGTCGCGGGCCCGCTGCTCCTCCTTGCCGT 10432 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| | || || || || | |||||| || ||||| |||||||| || | || Sbjct 10431 GGTTCTTCTTGCAGTCCAGGAAATCAAAGATGTCGGCGTGCCAGGGCTCCAGGTAGATGG 10372 Query 81359 C 81359 | Sbjct 10371 C 10371 >seq14948 Length=12203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 32123 GCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGC 32182 ||||||| ||||| | |||||||||| || || || ||| |||| | | ||| Sbjct 11338 GCACCATCATCAACTTGGCTCAGAACTACGTGGGCAGCAACAACTTGAATCTCTTGCAGC 11279 Query 32183 CATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACA 32242 | ||| |||||||| || ||||| ||| ||||| || ||||| ||| ||||||||| Sbjct 11278 CCATTGGTCAGTTTGGTACGCGGCTGTACGGCGGCAAAGACGCTGCCAGCCCCCGTTACA 11219 Query 32243 TCTTCACCC 32251 ||||||||| Sbjct 11218 TCTTCACCC 11210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569881362614960