Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4379 136 3e-27 seq3742 136 3e-27 >seq4379 Length=69586 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 49924 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 49865 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || ||||||||||| ||||| ||||| || || Sbjct 49864 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 49805 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||| || || || ||||||| | ||| | || || |||||| Sbjct 49804 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 49745 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| ||| | || |||||| | ||| |||| ||||| || Sbjct 49744 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGTGGTAT 49695 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || |||||||| || || || Sbjct 39289 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 39230 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 39229 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39170 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || || |||||| Sbjct 39169 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39110 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| ||| | || |||||| | ||| |||| || || Sbjct 39109 ATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGAGG 39063 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || ||||| || || || || Sbjct 40301 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 40242 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || ||||||||||| ||||| ||||| || || Sbjct 40241 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 40182 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || || |||||| Sbjct 40181 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 40122 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||||| | ||| |||| ||||| || Sbjct 40121 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTAT 40072 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | ||||||||||| || || || Sbjct 39845 ATGCAGATCTTCGTCAAGACCCTGACGGGTAAGACCATTACTCTTGAGGTCGAGCCAAGT 39786 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || ||||||||||| ||||| ||||| || || Sbjct 39785 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39726 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || || |||||| Sbjct 39725 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39666 Query 27168 ATTCAAAAGGAGTC 27181 || || || ||||| Sbjct 39665 ATCCAGAAAGAGTC 39652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 39599 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39540 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || || |||||| Sbjct 39539 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39480 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||||| | ||| |||| ||||| || Sbjct 39479 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTAT 39430 >seq3742 Length=77992 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| | || |||||||| || || || Sbjct 33020 ATGCAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGAGCCCAGT 33079 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| ||||||||||| ||||| ||||| || || Sbjct 33080 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33139 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || || |||||| Sbjct 33140 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33199 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||||| | ||| |||| ||||| || Sbjct 33200 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTAT 33249 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || ||||| || || || || Sbjct 32792 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 32851 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| || || ||||||||||| ||||| ||||| || || Sbjct 32852 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 32911 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | ||||| || || ||||||| | ||| | || || |||||| Sbjct 32912 CAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 32971 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||||| | ||| |||| ||||| || Sbjct 32972 ATCCAGAAAGAGTCCACACTCCACTTGGTTCTCCGTCTGCGTGGTGGTAT 33021 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| ||||| | || || ||||| || || || Sbjct 33248 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 33307 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| ||||| || || Sbjct 33308 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 33367 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | |||||| || || ||||||| | ||| | || || |||||| Sbjct 33368 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 33427 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || || ||||| ||| | || ||||| | ||| |||| || || Sbjct 33428 ATCCAGAAAGAGTCCACCCTCCACCTGGTTCTCCGTCTGCGTGGAGG 33474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434591216324160