Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4379 163 7e-35 seq3742 158 3e-33 seq4762 123 6e-23 seq9089 120 7e-22 >seq4379 Length=69586 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 40090 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 40149 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || || ||||| Sbjct 40150 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 40209 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || |||||||||||| | || |||||||||||||| ||| Sbjct 40210 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 40269 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 40270 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 40304 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 49713 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 49772 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || || ||||| Sbjct 49773 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 49832 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || |||||||||||| | || ||||| |||||||| ||| Sbjct 49833 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 49892 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 49893 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 49927 Score = 154 bits (170), Expect = 3e-32 Identities = 169/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || ||||||||||| |||||||| || || | || Sbjct 39065 TCCACGCAGACGGAGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAG 39124 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||||||||| || |||||||| || || || ||||| || || | Sbjct 39125 GGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGAT 39184 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||| |||||||| || || || |||||||||||| | || ||||| Sbjct 39185 GCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 39244 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| ||||| || || || ||||| || || | |||||| Sbjct 39245 AAGAGTGATGGTCTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 149 bits (164), Expect = 1e-30 Identities = 153/199 (77%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 210919 TGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTG 210978 |||||||||| |||||||| || || | ||||| | ||||||||||||||||| || | Sbjct 39650 TGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGG 39709 Query 210979 CGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCA 211038 ||||||| || || || ||||| || || | || || ||||| |||||||| ||| | Sbjct 39710 CGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGA 39769 Query 211039 CGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAG 211095 | || |||||||||||| ||| || ||||| ||||| || ||||| ||||| || | Sbjct 39770 CATTCTCGATGGTGTCA---CTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGG 39826 Query 211096 TCTTTACAAACACCTGCAT 211114 |||| || || | |||||| Sbjct 39827 TCTTGACGAAGATCTGCAT 39845 Score = 116 bits (128), Expect = 9e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 39448 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39507 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || || ||||| Sbjct 39508 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 39567 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 |||||||| || || || ||||||||||| Sbjct 39568 TGGATCTTGGCCTTGACATTCTCGATGGTGTC 39599 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 39862 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39921 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||| | | || || || || | || ||||| || || | || || ||||| Sbjct 39922 TCCAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCT 39981 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || || || | |||||||||| ||| || ||||| || || || Sbjct 39982 TGGATCTTGGCCTTGACATTCTTGATGGTGTCA---CTTGGCTCGACCTCAAGGGTAATG 40038 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| | ||||| || || | ||||| Sbjct 40039 GTCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 40073 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||| ||||| | | |||||| || || | ||||| | ||||||||||||||| Sbjct 49494 TGGAGGGTGAACTCTCTCTTGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGC 49553 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 | | || || || || | || ||||| || || | || || ||||| |||||||| Sbjct 49554 ATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTGGATCTTG 49613 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || | |||||||||| ||| || ||||| || || || ||||| ||| Sbjct 49614 GCCTTGACATTCTTGATGGTGTCA---CTTGGCTCGACCTCAAGGGTAATGGTCTTACCC 49670 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | ||||| || || | |||||| Sbjct 49671 GTCAAGGTCTTGACGAAGATCTGCAT 49696 >seq3742 Length=77992 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 33003 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 32944 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| || || | || || ||||| Sbjct 32943 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 32884 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || |||||||||||| | || |||||||||||||| ||| Sbjct 32883 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 32824 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| || || | |||||| || Sbjct 32823 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 32789 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||||||| |||||||| || || | ||||| | |||||| Sbjct 33231 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 33172 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || |||||||| || || || ||||| || || | || || ||||| Sbjct 33171 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 33112 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||| || ||| || || |||||||||||| | || ||||| |||||||| ||| Sbjct 33111 TGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 33052 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 33051 TTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || ||||| || ||||||||||| |||||||| || || | || Sbjct 33472 TCCACGCAGACGGAGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAG 33413 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||||||||||||||| || |||||||| || || || ||||| || || | Sbjct 33412 GGTGCGGCCATCTTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGAT 33353 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||| |||||||| || || || |||||||||||| | || ||||| Sbjct 33352 GCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTC 33293 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || || || | ||||| || || | |||||| Sbjct 33292 AAGGGTGATGGTTTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 >seq4762 Length=92317 Score = 123 bits (136), Expect = 6e-23 Identities = 124/161 (77%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || || || ||||| || |||||||| || |||||||| || || | ||||| Sbjct 80957 CGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 80898 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| |||||||| || | || ||||| || || | ||| Sbjct 80897 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCT 80838 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||||||||||||||||| || || || ||||||||||| Sbjct 80837 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 80797 >seq9089 Length=72386 Score = 120 bits (132), Expect = 7e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || || || || || ||||| || |||||||| || |||||||| || || | ||||| Sbjct 52162 CGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 52103 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || |||||||||||||| || ||||| || | || ||||| || || | ||| Sbjct 52102 CGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCT 52043 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 ||||||||||||||||| || || || ||||||||||| Sbjct 52042 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 52002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158258184050795