Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3742 98.7 9e-16 seq4379 93.3 4e-14 >seq3742 Length=77992 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 33000 ACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 32941 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || |||||||||||||| |||||| | || ||||||||| Sbjct 32940 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCTTTGTCTTG 32882 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | || || || | ||| || || | ||||| | || Sbjct 32881 GATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTT 32822 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || || || ||||| |||||||| Sbjct 32821 GCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 32789 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 33228 ACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 33169 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| |||||| | || ||||||||| Sbjct 33168 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCTTTGTCTTG 33110 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 |||||| ||||| || | | || || || | ||| || || | ||||| | || Sbjct 33109 GATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 33050 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 33049 ACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 >seq4379 Length=69586 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 40093 ACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 40152 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| |||||| | || ||||||||| Sbjct 40153 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCTTTGTCTTG 40211 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | || || || | ||| || || | ||||| | || Sbjct 40212 GATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTCTT 40271 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || || || ||||| |||||||| Sbjct 40272 GCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 40304 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 49716 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 49775 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| |||||| | || ||||||||| Sbjct 49776 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCTTTGTCTTG 49834 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| || | | || || || | ||| || || | ||||| | || Sbjct 49835 GATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 49894 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || ||||| || || || ||||| |||||||| Sbjct 49895 GCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 49927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| |||||| || || || || || | || || || | || || Sbjct 39081 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCC 39140 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || || || || |||||||||||||| |||||| | || ||||||||| Sbjct 39141 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGG-ATGCCCTCTTTGTCTTG 39199 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| || | | || || || | ||| || || | ||||| | || Sbjct 39200 GATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 39259 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 39260 GCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429230536759079