Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3742 118 7e-22 seq4379 113 3e-20 >seq3742 Length=77992 Score = 118 bits (130), Expect = 7e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| || || || || ||||||||||| || || || Sbjct 32789 AAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCC 32848 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | |||||||| || | || ||||| Sbjct 32849 AGTGACACCATCGAGAATGTCAAAGCCAAGA-TCCAAGACAAAGAGGGCATCCCACCAGA 32907 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || |||||||| || || |||||||| | ||||| | || || Sbjct 32908 CCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 32967 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || |||||||||||| | || || ||| Sbjct 32968 CAACATCCAGAAAGAGTCCACACTCCACTTGGTT 33001 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || || || ||| Sbjct 33020 ATGCAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGAGCCCAGT 33079 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | |||||||| || | || ||||| || Sbjct 33080 GACACCATCGAGAATGTCAAAGCCAAAA-TCCAAGACAAAGAGGGCATCCCACCAGACCA 33138 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||| | ||||| | || ||||| Sbjct 33139 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 33198 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 ||| || |||||||||||| | || || ||| Sbjct 33199 CATCCAGAAAGAGTCCACACTCCACTTGGTT 33229 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||| | || || ||||| ||||| || || || || ||| Sbjct 33248 ATGCAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 33307 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || | || ||||| || Sbjct 33308 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCACCAGACCA 33366 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||| | ||||| | || ||||| Sbjct 33367 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 33426 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 33427 CATCCAGAAAGAGTCCAC 33444 >seq4379 Length=69586 Score = 113 bits (124), Expect = 3e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| || || || || ||||||||||| || || || Sbjct 40304 AAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCC 40245 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | |||||||| || | || ||||| Sbjct 40244 AGTGACACCATCGAGAATGTCAAAGCCAAGA-TCCAAGACAAAGAGGGCATCCCACCAGA 40186 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||| || || |||||||| | ||||| | || || Sbjct 40185 CCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 40126 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || |||||||||||| | || || ||| Sbjct 40125 CAACATCCAGAAAGAGTCCACACTCCACTTGGTT 40092 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || |||||||| || || || ||| Sbjct 39289 ATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCCAGT 39230 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | |||||||| || | || ||||| || Sbjct 39229 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAAGACAAAGAGGGCATCCCACCAGACCA 39171 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || ||||| || || |||||||| | ||||| | || ||||| Sbjct 39170 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 39111 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||||||||| | || || ||| | | |||| ||||| Sbjct 39110 CATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTGCGTGGAGG 39063 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| || || || || |||||||| || || || || Sbjct 49927 AAGATGCAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCC 49868 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | |||||||| || | || ||||| Sbjct 49867 AGTGACACCATCGAGAATGTCAAAGCCAAGA-TCCAAGACAAAGAGGGCATCCCACCAGA 49809 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || || || || || |||||||| | ||||| | || || Sbjct 49808 CCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 49749 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTT 23820 |||||| || ||||||||||| | || || ||| Sbjct 49748 CAACATCCAGAAAGAGTCCACCCTCCACTTGGTT 49715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337761676612964