Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq3742 134 3e-26 seq4379 131 4e-25 seq4762 114 3e-20 seq9089 111 4e-19 seq20273 96.9 8e-15 seq14946 93.3 1e-13 >seq3742 Length=77992 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 33459 AGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 33400 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || || |||||| Sbjct 33399 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 33340 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 33339 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTT 33280 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 33279 TTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 33003 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 32944 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || ||||| || || || || || |||||| Sbjct 32943 TCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 32884 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||||||||||| || || || || | ||||| ||| Sbjct 32883 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 32824 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||| || Sbjct 32823 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 32789 Score = 120 bits (132), Expect = 7e-22 Identities = 156/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 33231 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 33172 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || || |||||| Sbjct 33171 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 33112 Query 225622 TGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| |||| ||| ||||||||||| || || || || | ||||| || Sbjct 33111 TGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGT 33053 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || |||| || || | ||| | ||||| Sbjct 33052 CTTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 >seq4379 Length=69586 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 39078 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39137 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || || |||||| Sbjct 39138 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 39197 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || || || || | ||||| ||| Sbjct 39198 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 39257 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 39258 TTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 131 bits (144), Expect = 4e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 49713 AGAACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 49772 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || || || || |||||| Sbjct 49773 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 49832 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||||||||||| || || || || | ||||| ||| Sbjct 49833 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 49892 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||| || Sbjct 49893 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 49927 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 40090 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 40149 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || || |||||| Sbjct 40150 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 40209 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| || ||| ||||||||||| || || || || | ||||| ||| Sbjct 40210 TGGATCTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGAGTGATGGTC 40269 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | ||||| || Sbjct 40270 TTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 40304 Score = 113 bits (124), Expect = 1e-19 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 39448 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39507 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || || |||||| Sbjct 39508 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 39567 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||| ||| ||||||||||| Sbjct 39568 TGGATCTTGGCCTTGACATTCTCGATGGTGTC 39599 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 225518 TGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAG 225577 |||| ||||| |||| ||||| || | || || | |||||||| |||||||| || | Sbjct 39650 TGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCGG 39709 Query 225578 CGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCA 225637 ||||||| || || || ||||| || || || || || |||||||||||||| || | Sbjct 39710 CGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGA 39769 Query 225638 CAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTT 225697 || ||||||||||| | || || || | || || ||||| ||||||| || | Sbjct 39770 CATTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGGTCT 39829 Query 225698 TTATGAACACTTGCAT 225713 | | ||| | ||||| Sbjct 39830 TGACGAAGATCTGCAT 39845 Score = 104 bits (114), Expect = 6e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| ||||| |||| ||||| || | || || | |||||| Sbjct 39862 AGAACCAAGTGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCT 39921 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||| | | || || || || | || ||||| || || || || || |||||| Sbjct 39922 TCCAGCTGCATTACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCT 39981 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| | ||||||||| | || || || | || || ||| Sbjct 39982 TGGATCTTGGCCTTGACATTCTTGATGGTGTCACTTGGCTCGACCTCAAGGGTAATGGTC 40041 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || |||||||| || || | ||| | |||||| Sbjct 40042 TTACCCGTCAAGGTCTTGACGAAGATTTGCAT 40073 >seq4762 Length=92317 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || ||||| || |||||||| ||||| || || |||| ||||| |||| | || Sbjct 80957 CGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 80898 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||| || | || ||||| ||||| || ||| Sbjct 80897 CGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCT 80838 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| |||||||| ||| ||| ||||||||||| Sbjct 80837 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 80797 >seq9089 Length=72386 Score = 111 bits (122), Expect = 4e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || ||||| || |||||||| ||||| || || |||| ||||| |||| | || Sbjct 52162 CGCAGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTG 52103 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || || ||||| || | || ||||| ||||| || ||| Sbjct 52102 CGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCT 52043 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| |||||||| ||| ||| ||||||||||| Sbjct 52042 TCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 52002 >seq20273 Length=10339 Score = 96.9 bits (106), Expect = 8e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||||||||||||||| ||||| || ||||| ||||| || |||||||| || || Sbjct 2146 TGTCCATCAGTAATAGAGATGACATTAGTCGGGATGTAAGCCGACACATCACCGGCCTGG 2087 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || || | |||||| ||||| || || || |||||||| || Sbjct 2086 GTCTCAATAACAGGCAAGGCAGTCAGGGAACCACCACCGAA 2046 >seq14946 Length=12957 Score = 93.3 bits (102), Expect = 1e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || ||||||||||||||||| ||||| || ||||| ||||| || |||||||| || || Sbjct 10394 TGTCCATCAGTAATAGAGATGACATTAGTCGGGATGTAAGCCGACACATCACCGGCCTGG 10335 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAA 4577 || || | ||||| ||||| || || || |||||||| || Sbjct 10334 GTCTCAATGACAGGCAAGGCAGTCAGGGAACCACCACCGAA 10294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191611645527002