Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq503 100 4e-16 seq2645 87.8 2e-12 >seq503 Length=134583 Score = 100 bits (110), Expect = 4e-16 Identities = 157/224 (70%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| | ||||| | || |||||||| || | || ||||| | ||||||||||| Sbjct 10721 TCATCGCGGCTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTTTC 10780 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||||| || | ||||||||||| || ||||| || || || || || ||||| || Sbjct 10781 AGCCAAAAGATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGGCC 10840 Query 48285 GTAAGTCTCTCTCCGTAACTG---GCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 | |||||| ||||| || | ||| | ||||| | | ||||| |||||| Sbjct 10841 ACGACTCTCTCACCGTAGGTGGACGTTTCCGAATTAATCCAGTTTAGCGCCCAGTCAGCC 10900 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 || | || || ||||| | || || || || ||||| | ||| Sbjct 10901 TTTTGTTTGACGCAAGGTAGCGTCTCAATGGCGTTAAACAAAAA 10944 >seq2645 Length=46952 Score = 87.8 bits (96), Expect = 2e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||||||||| || || || ||||| || ||||| |||||||| || || || ||||| Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCCACCGTTGTGCCCAATCAGCC 48341 ||||||||||| | | ||||| ||| || ||||| || ||||| ||||| Sbjct 14738 ACGAGTCTCTCTCCAAATGTAGCTTCCTTGGCATGAATCCATCGAATGGCCCAGTCAGCT 14679 Query 48342 TTCTTCTTTACACAAGGCA 48360 |||||||| | || |||| Sbjct 14678 TTCTTCTTGATGCATGGCA 14660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694146209345120