Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq503 118 2e-21 seq2645 96.9 5e-15 >seq503 Length=134583 Score = 118 bits (130), Expect = 2e-21 Identities = 161/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| | ||||| | || |||||||| || | |||||||| | ||||| ||||| Sbjct 10721 TCATCGCGGCTAATCAGCTCATTAGAAAACGTCAAGCCAGGCATCAACCCACGTTTTTTC 10780 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || | ||||||||||| || ||||| || || || || || || || || Sbjct 10781 AGCCAAAAGATGGAGGCGAAAGATCCCGAGAAGAAAATCCCCTCCACCGCGGCAAAGGCC 10840 Query 46774 ACAAGTCTCTCTCCGTAACTG---GCATCATTATGAATCCACCTTTGAGCCCAATCAGCC 46830 || | |||||| ||||| || | || || |||||| || | ||||| |||||| Sbjct 10841 ACGACTCTCTCACCGTAGGTGGACGTTTCCGAATTAATCCAGTTTAGCGCCCAGTCAGCC 10900 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 |||| || || ||||| | || || || || ||||| | ||| Sbjct 10901 TTTTGTTTGACGCAAGGTAGCGTCTCAATGGCGTTAAACAAAAA 10944 >seq2645 Length=46952 Score = 96.9 bits (106), Expect = 5e-15 Identities = 105/139 (76%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||||||||| || || ||||| || ||||| |||||||| || || |||||||| Sbjct 14798 AGCCAAAATATAGCTGCAAATGATCCCGAGAAGAAGATGCCTTCCACTGCAGCGAATGCA 14739 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCATT---ATGAATCCACCTTTGAGCCCAATCAGCC 46830 || ||||||||||| | | || || || ||||||||| | ||||| ||||| Sbjct 14738 ACGAGTCTCTCTCCAAATGTAGCTTCCTTGGCATGAATCCATCGAATGGCCCAGTCAGCT 14679 Query 46831 TTTTTCTTTACACAAGGCA 46849 || ||||| | || |||| Sbjct 14678 TTCTTCTTGATGCATGGCA 14660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712398068362560