Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq4379 125 2e-23 seq3742 123 6e-23 seq4762 91.5 3e-13 seq9089 87.8 4e-12 >seq4379 Length=69586 Score = 125 bits (138), Expect = 2e-23 Identities = 149/199 (75%), Gaps = 10/199 (5%) Strand=Plus/Plus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCCCGG 151968 |||||||| ||||||||||| || | | || | |||||||| || ||||| |||| Sbjct 39652 GACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTT--CCGG 39709 Query 151969 CGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGA 152028 ||||||| || | ||||||||| | | ||| || || || ||||| || || ||||| Sbjct 39710 CGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTGGCTTTGA 39769 Query 152029 CAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 || |||| | | |||| ||| ||| || ||||||||||| || || ||||| || | Sbjct 39770 CATTCTCGATGGTGTC---ACTTGGCTCGACCTCAAGAGTAATGGTCTTACCCGTCAGGG 39826 Query 152086 TCTTCACGAAGACCTGCAT 152104 |||| ||||||| |||||| Sbjct 39827 TCTTGACGAAGATCTGCAT 39845 Score = 120 bits (132), Expect = 7e-22 Identities = 157/213 (74%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | |||||||| | Sbjct 39083 CAAG-TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 39141 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || | ||||||||| | | ||| || || || ||||| Sbjct 39142 GCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 39199 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || |||||| |||| | | |||| ||| ||| || |||||||| || || Sbjct 39200 GATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 39256 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| ||||||| |||||| Sbjct 39257 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCAT 39289 Score = 120 bits (132), Expect = 7e-22 Identities = 159/216 (74%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | |||||||| | Sbjct 40095 CAAG-TGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 40153 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || | ||||||||| | | ||| || || || ||||| Sbjct 40154 GCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 40211 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || ||||||| |||| | | |||| ||| ||| || || ||||| || || Sbjct 40212 GATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGAGTGATGGT 40268 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| ||||||| |||||| || Sbjct 40269 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 40304 Score = 120 bits (132), Expect = 7e-22 Identities = 159/216 (74%), Gaps = 11/216 (5%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | |||||||| | Sbjct 49718 CAAG-TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 49776 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| || |||||||| || | ||||||||| | | ||| || || || ||||| Sbjct 49777 GCTGCTTT--CCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 49834 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || ||||||| |||| | | |||| ||| ||| || |||||||| || || Sbjct 49835 GATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 49891 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| ||||||| |||||| || Sbjct 49892 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 49927 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/213 (70%), Gaps = 11/213 (5%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | |||||||| | Sbjct 39867 CAAG-TGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 39925 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | || || |||| || || || ||||||||| | | ||| || || || ||||| Sbjct 39926 GCTGCATT--ACGGCAAAAATCAGATGCTGCTGGTCTGGTGGGATGCCCTCGTTGTCTTG 39983 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || |||||| ||| | | |||| ||| ||| || ||||| ||||| || Sbjct 39984 GATCTTGGCCTTGACATTCTTGATGGTGTC---ACTTGGCTCGACCTCAAGGGTAATGGT 40040 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | ||||| ||||||| ||||| Sbjct 40041 CTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 40073 >seq3742 Length=77992 Score = 123 bits (136), Expect = 6e-23 Identities = 158/213 (74%), Gaps = 11/213 (5%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | |||||||| | Sbjct 33226 CAAG-TGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 33168 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || | ||||||||| | | ||| || || || ||||| Sbjct 33167 GCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 33110 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 ||||| ||||||| |||| | | |||| ||| ||| || |||||||| || || Sbjct 33109 GATTTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGT 33053 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| ||||||| |||||| Sbjct 33052 CTTACCTGTCAGGGTCTTGACGAAGATCTGCAT 33020 Score = 118 bits (130), Expect = 2e-21 Identities = 159/218 (73%), Gaps = 10/218 (5%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || |||||||| ||||||||||| || | | || | ||||| Sbjct 33460 GAGAACCAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATC 33401 Query 151952 TTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| || ||||| ||||||||||| || | ||||||||| | | ||| || || || Sbjct 33400 TTCCAGCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTG 33343 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTA 152066 ||||| || || |||||| |||| | | |||| ||| ||| || ||||| || Sbjct 33342 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCAAGGGTG 33286 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || | ||||| ||||||| |||||| Sbjct 33285 ATGGTTTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 33248 Score = 116 bits (128), Expect = 9e-21 Identities = 158/216 (73%), Gaps = 11/216 (5%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || |||||||| ||||||||||| || | | || | |||||||| | Sbjct 32998 CAAG-TGGAGTGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCA 32940 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||| ||||| || | ||||||||| | | ||| || || || ||||| Sbjct 32939 GCTGCTTT--CCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 32882 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGT 152071 || || ||||||| |||| | | |||| ||| ||| || || ||||| || || Sbjct 32881 GATCTTGGCTTTGACATTCTCGATGGTGTC---ACTGGGCTCGACCTCGAGAGTGATGGT 32825 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || ||||| ||||||| |||||| || Sbjct 32824 CTTGCCTGTCAGGGTCTTGACGAAGATCTGCATCTT 32789 >seq4762 Length=92317 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || || || || || || ||||| || ||||||||||| |||| | || | Sbjct 80954 AGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 80895 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || ||||||||||| |||||||||||||| | || ||| |||||| Sbjct 80894 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCTTCC 80835 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 || || || || || |||||| |||| | | |||| Sbjct 80834 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 80797 >seq9089 Length=72386 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 || || || || || || || || ||||| || ||||||||||| |||| | || | Sbjct 52159 AGCCTCAGCACCAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 52100 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || ||||| ||||| |||||||||||||| | || ||| |||||| Sbjct 52099 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATGCCTTCC 52040 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC 152044 || || || || || |||||| |||| | | |||| Sbjct 52039 TTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 52002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152931094910793