Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiria_20miniata_20[genbank_20GCA_5F000285935.1_202012-08-13] 60,183 sequences; 811,028,858 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq4379 158 3e-33 seq3742 154 4e-32 seq4762 109 1e-18 seq9089 105 2e-17 >seq4379 Length=69586 Score = 158 bits (174), Expect = 3e-33 Identities = 163/210 (78%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || ||||| |||||||| || || ||| Sbjct 40298 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGA--GCCCAGTG 40241 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 40240 ACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 40181 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| ||||| |||||||| | || || | || || ||| Sbjct 40180 AGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 40121 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || ||||| || |||| || Sbjct 40120 TCCAGAAAGAGTCCACACTCCA-CTTGGTT 40092 Score = 145 bits (160), Expect = 2e-29 Identities = 160/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || ||||| || ||||| || || ||| Sbjct 39286 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 39229 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 39228 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 39169 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| ||||| |||||||| | || || | || || ||| Sbjct 39168 AGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 39109 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || || || || |||| || Sbjct 39108 TCCAGAAAGAGTCCACCCTCCA-CTTGGTT 39080 Score = 145 bits (160), Expect = 2e-29 Identities = 160/210 (76%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || ||||| || ||||| || || ||| Sbjct 49921 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 49864 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 49863 ACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 49804 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||| ||||| ||||| |||||||| | || || | || || ||| Sbjct 49803 AGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 49744 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || || || || |||| || Sbjct 49743 TCCAGAAAGAGTCCACCCTCCA-CTTGGTT 49715 Score = 131 bits (144), Expect = 4e-25 Identities = 146/193 (76%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || || || || || || || || ||||| || || || Sbjct 39842 CAGATCTTCGTCAAGACCCTGACGGGTAAGACCATTACTCTTGAGGTCGA--GCCAAGTG 39785 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 39784 ACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 39725 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| ||||| |||||||| | || || | || || ||| Sbjct 39724 AGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 39665 Query 178102 TCCAAAAAGAATC 178114 |||| ||||| || Sbjct 39664 TCCAGAAAGAGTC 39652 Score = 125 bits (138), Expect = 2e-23 Identities = 119/151 (79%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| || |||||||| || ||||| || |||||| Sbjct 39599 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 39540 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || |||||||||||||| ||||| |||||||| | || || | || || ||| Sbjct 39539 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 39480 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || ||||| || |||| || Sbjct 39479 ATCCAGAAAGAGTCCACACTCCA-CTTGGTT 39450 >seq3742 Length=77992 Score = 154 bits (170), Expect = 4e-32 Identities = 162/210 (77%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || ||||| |||||||| || || ||| Sbjct 32795 CAGATCTTCGTCAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGA--GCCCAGTG 32852 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 32853 ACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 32912 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||| |||||||| ||||| |||||||| | || || | || || ||| Sbjct 32913 AGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 32972 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || ||||| || |||| || Sbjct 32973 TCCAGAAAGAGTCCACACTCCA-CTTGGTT 33001 Score = 150 bits (166), Expect = 4e-31 Identities = 160/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || | ||||| ||||| |||||||| ||||| || || ||| Sbjct 33251 CAGATCTTCGTCAAGACCTTGACAGGCAAAACCATCACCCTTGAGGTCGA--GCCCAGTG 33308 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| ||||| || |||||||| || ||||| || ||||||| Sbjct 33309 ACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 33368 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| ||||| |||||||| | || || | || || ||| Sbjct 33369 AGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 33428 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| ||||| || || || || || ||| Sbjct 33429 TCCAGAAAGAGTCCACCCTCCACCTGGTT 33457 Score = 149 bits (164), Expect = 2e-30 Identities = 161/210 (77%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || || ||||| || || ||||| || ||||| || || ||| Sbjct 33023 CAGATCTTCGTCAAGACCCTGACAGGTAAGACCATCACTCTTGAGGTCGA--GCCCAGTG 33080 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| || || || |||||||| || ||||| || ||||||| Sbjct 33081 ACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAAGAGGGCATCCCACCAGACCAGC 33140 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || |||||||||||||| ||||| |||||||| | || || | || || ||| Sbjct 33141 AGCGTCTGATCTTCGCCGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAACA 33200 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTT 178131 |||| ||||| || ||||| || |||| || Sbjct 33201 TCCAGAAAGAGTCCACACTCCA-CTTGGTT 33229 >seq4762 Length=92317 Score = 109 bits (120), Expect = 1e-18 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||||| Sbjct 80797 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCAGACCAG 80856 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||||||||| || ||||| || || || | || || |||| || ||| Sbjct 80857 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 80916 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || || || || || || |||| || Sbjct 80917 ATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGAGGCT 80954 >seq9089 Length=72386 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 |||||||||||||| ||||| ||||| |||||||| ||||| ||||| || |||||| Sbjct 52002 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCAGACCAG 52061 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || | || ||||| ||||| || ||||| || || || | || || |||| || ||| Sbjct 52062 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCTCCGACTACAAC 52121 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || || || || || || |||| || Sbjct 52122 ATCCAGAAGGAGTCCACGCTCCACCTGGTGCTGAGGCT 52159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202803009266502