Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq481880 239 1e-58 >seq481880 Length=40534 Score = 239 bits (264), Expect = 1e-58 Identities = 443/644 (69%), Gaps = 12/644 (2%) Strand=Plus/Plus Query 804 GAATGGGCGGATGCTAATTACTATCTCCCGAAAGAATCCGCATACCAGGAAGGGCGCTGG 863 || ||||| || | |||| ||||| | | ||||| |||| || ||||| || ||| Sbjct 743 GAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCTTCATATCACGAAGGTCGTTGG 802 Query 864 GAAACACTGCCCTTTCAGCGGGCCATCATGAATGCGATGGGCAGCGACTACATCCGTGAG 923 |||| |||| ||| || ||| ||| | || || |||||| || ||||| | Sbjct 803 AAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATGGGCTCGGATGCAATCCGAGTT 862 Query 924 GTGAATGTGGTGAAGTCTGCCCGTGTCGGTTATTCCAAAATGCTGCTGGGTGTTTATGCC 983 ||||| ||||| ||||| || || | ||||| |||| ||||| || | || | ||| Sbjct 863 GTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAGATGCTCCTCGCTGCTATTGCG 922 Query 984 TACTTTATAGAGCATAAGCAGCGCAACACCCTTATCTGGTTGCCGACGGATGGTGATGCC 1043 |||| ||||||| |||| || ||| || | | |||||| ||| || || Sbjct 923 TACTACGTAGAGCACAAGCGTCGGAACGTACTGTCGTTCTCGCCGACCGATACCGACGCT 982 Query 1044 GAGAACTTTATGAAAACCCACGTTGAGCCGACTATTCGTGATATTCCGTCGCTGCTGGCG 1103 ||||| ||| ||||| |||||||| | | ||||||||| ||||| ||||| || | Sbjct 983 GAGAAGTTTTCAAAAACTCACGTTGATACAGCAATTCGTGATGTTCCGACGCTGAAGGAG 1042 Query 1104 CTGGCCCCGTGGTATGGCAAAAAGCACCGGGATAACACGCTC-ACCATGAAGCGTTTCAC 1162 || ||||| |||| || | |||||||| ||||||||| | | || |||||| ||| | Sbjct 1043 CTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAACACGTTAGATCA-GAAGCGGTTCTC 1101 Query 1163 TAATGG---GCGTGGCTTCTGGTGCCTGGGCGGTAAAGCGGCAAAAAACTACCGTGAAAA 1219 ||| || || ||| || |||||||| ||||| | ||||||||||||| Sbjct 1102 TAACGGCAAGCAATTATTCATACGC---GGCGGTAAGGCGGCTAGGAACTACCGTGAAAC 1158 Query 1220 GTCGGTGGATGTGGCGGGTTATGATGAACTTGCTGCTTTTGATGATGATATTGAACAGGA 1279 ||| | ||||| | | |||||| || || || || || ||| | ||||||||| | || Sbjct 1159 GTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATTCGATAAGGATATTGAAAAAGA 1218 Query 1280 AGGCTCTCCGACGTTCCTGGGTGACAAGCGTATTGAAGGCTCG--GTCTGGCCAAAGTCC 1337 ||| || ||||| || ||||| |||||| ||||||| ||| || || ||||| Sbjct 1219 AGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGGTTCGACGTACGG--TAAGTCG 1276 Query 1338 ATCCGTGGCTCCACGCCAAAAGTGAGAGGCACCTGTCAGATTGAGCGTGCAGCCAGTGAA 1397 || ||||| || || |||||| | | ||| || |||||||| ||| || || || Sbjct 1277 ATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCAGATTGAAAATGCTGCTAGCGAG 1336 Query 1398 TCCCCGCATTTTATGCGTTTTCATGTTGCCTGCCCGCATTGCGG 1441 ||| | | | | | |||| || | |||||||| ||||| Sbjct 1337 TCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCACTGCGG 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149548010740544