Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq481880 179 1e-40 >seq481880 Length=40534 Score = 179 bits (198), Expect = 1e-40 Identities = 445/668 (67%), Gaps = 18/668 (3%) Strand=Plus/Plus Query 639 CCGGAACCCATGACAGCTGTCGAATGGGCCGATGCGCATTATTACCTTCCGAAAGAATCC 698 |||||||| | ||||| ||| ||||| || | | ||| ||| ||| | | ||||| Sbjct 722 CCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCT 781 Query 699 GCTTATCAGGAGGGTCGCTGGGAAACACTGCCATTTCAGCGCGCGATCATGAATGCGATG 758 | ||||| || ||||| ||| |||| |||| || || |||||| | || || ||| Sbjct 782 TCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATG 841 Query 759 GGCAGTGACTATATTCGCATTGTTAACGTCATTAAGTCGGCGCGAGTAGGCTATTCGAAA 818 ||| || || || |||| ||||| | |||||||| ||| | || || | || Sbjct 842 GGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAG 901 Query 819 ATGCTCCTCGGCGTCATTGCTTATTTCATCGAGCACAAACAGCGTAATGAGTTGCTGTGG 878 |||||||||| | ||||| || | | | |||||||| | || || | | |||| | Sbjct 902 ATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACG---TACTGTCG 958 Query 879 CT---GCCGACCGACGGCGACGCAGATAA--TTTCATGAAGTCACACGTTGAACCGACGA 933 | ||||||||| |||||| || || ||||| || |||| ||||| | | | Sbjct 959 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCAC--GTTGATACAGCAA 1016 Query 934 TTCGTGATGTCCCTTCTCTGTTATCACTTGCACCCTGGTACGGGAAAAAGCACAGGGACA 993 |||||||||| || | ||| ||||| || |||| ||| | |||||| | || | Sbjct 1017 TTCGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATA 1076 Query 994 ATACCCTGTCGAT--GAAGCGTTTTACCAATGGCCGTGGATTTTGGTGCCTGGGCGGTAA 1051 || | | ||| |||||| || | || ||| ||| | | |||||||| Sbjct 1077 --ACACGTTAGATCAGAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAA 1134 Query 1052 GGCTGCAAAAAACTATCGTGAAAAATCAGTAGATGTAGTTGGTTACGATGAACTGGCGGC 1111 ||| || | ||||| ||||||| || | ||||| || | ||| || || || || || Sbjct 1135 GGCGGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGC 1194 Query 1112 GTTTGACGCAGACATTGAGAAAGAGGGTTCGCCGACCTTCCTGGGGGATAAGCGTATCGA 1171 || || || ||||| ||||| || ||||||||| || || ||||||||| | || Sbjct 1195 ATTCGATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGA 1254 Query 1172 GGGCTC--TGTTTGGCCCAAATCCATACGCGGTTCGACACCGAAATTGCGTGGAACGTGT 1229 || || || || || || ||||| ||||| ||||| ||| | || || || Sbjct 1255 AGGTTCGACGTACGG--TAAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGC 1312 Query 1230 CAGATTGAGCGAGCAGCAAAAGAGTCCGGGCATTTTATGCGATTTCATGTCGCATGCCCG 1289 |||||||| || || | ||||||| | | | | |||||| ||| | |||||| Sbjct 1313 CAGATTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCG 1372 Query 1290 CATTGTGG 1297 || || || Sbjct 1373 CACTGCGG 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142984610714852