Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq244905 145 8e-30 seq2924339 129 6e-25 seq2660963 111 2e-19 seq1854222 104 2e-17 seq2986189 93.3 4e-14 seq1551409 91.5 1e-13 seq128143 91.5 1e-13 seq1153379 86.0 6e-12 seq831659 86.0 6e-12 seq497311 84.2 2e-11 seq2371163 82.4 8e-11 seq1385232 82.4 8e-11 seq129324 82.4 8e-11 >seq244905 Length=747 Score = 145 bits (160), Expect = 8e-30 Identities = 118/143 (83%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 116733 ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCA 116792 ||||| | || |||||| ||||| ||||||| || |||||||||||||||||||||| Sbjct 27 ACGAGAGGCACTTCATCTCCCACGTCTTGGCCTTCTTTGCCGCCAGCGACGGCATCGTCA 86 Query 116793 ACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCT 116852 ||||||| ||||| ||||| ||| |||||| | |||||| | ||||| || ||||||| Sbjct 87 ACGAGAACCTGGTGGAGCGGTTCAGCCAGGAGATACAGGTGCCTGAGGCACGCTGCTTCT 146 Query 116853 ACGGCTTTCAGATCGCCATGGAG 116875 |||| || ||||||||||| ||| Sbjct 147 ACGGATTCCAGATCGCCATCGAG 169 >seq2924339 Length=450 Score = 129 bits (142), Expect = 6e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| || |||||||| | |||||||| || || |||| || Sbjct 221 TCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGGCTGATCTTCG 162 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | ||||| |||||||| || | |||||||||| |||||||||||||||||||||| ||| Sbjct 161 CCGGCAAGCAGCTGGAGGATGGGCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCA 102 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | || || || ||| || | || ||||||| Sbjct 101 CCCTCCACCTGGTGCTGAGGCTGCGGGGCGG 71 >seq2660963 Length=245 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| |||||||| ||||| | || |||||||| |||| || || ||||| || || Sbjct 16 TGTTCAACGCCATTGAGACCCTACCTTGCGTCAAGCAGAAAGCTGACTGGGCATTGAACT 75 Query 117006 GGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||| | |||| | || | | ||||||||| | ||||||||||| ||||| ||| Sbjct 76 GGATCAACT-CAGACTCGACCACGTACGGCGAGCGAGTTGTGGCCTTCGCCGCCGTAGAG 134 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| | ||||| ||||| || ||| |||| || ||||| ||||| | || ||| Sbjct 135 GGCATTTTCTTCTCGGGGTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGAAAGATG 194 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 | ||| |||| ||| ||| ||||| ||| Sbjct 195 CACGGTTTGACGTTCTCCAATGAGCTGATC 224 >seq1854222 Length=138 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||||||||||||||| | |||||||| || || |||| ||| || || |||||||| Sbjct 16 GACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAG 75 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || | |||||||| |||||||||||||||||| ||| |||| || || Sbjct 76 GATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCA 125 >seq2986189 Length=758 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 116735 GAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAAC 116794 |||| ||||||||||||||| | |||||||| || || || || || || || ||||| Sbjct 405 GAGCAACATTTCATCAAGCACATCCTGGCCTTCTTTGCAGCAAGTGATGGTATAGTCAAT 346 Query 116795 GAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTAC 116854 ||||| || || ||| | || ||||||||| || | | ||||| | || ||||| Sbjct 345 GAGAACCTCGTAGAGAGGTTTAGTCAGGAGGTACAAATTCCTGAGGCAAGATGTTTCTAT 286 Query 116855 GGCTTTCAGATCGCCATGGAG 116875 ||||| ||||| | |||||| Sbjct 285 GGCTTCCAGATGGTTATGGAG 265 >seq1551409 Length=127 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 116733 ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCA 116792 ||||| | || |||||| || || ||||||| ||||||||||||||||||||||||| Sbjct 42 ACGAGAGGCACTTCATCTCCCATGTCTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCA 101 Query 116793 ACGAGAATCTGGTCGAGCGTTTC 116815 ||||||| ||||| ||||| ||| Sbjct 102 ACGAGAACCTGGTGGAGCGCTTC 124 >seq128143 Length=1990 Score = 91.5 bits (100), Expect = 1e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 116733 ACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCA 116792 ||||| || |||||| ||||| ||||||| ||||||||||||||||||||||||| Sbjct 1073 ACGAGAAGCACTTCATCTCCCACGTCTTGGCCTTCTTCGCCGCCAGCGACGGCATCGTCA 1132 Query 116793 ACGAGAATCTGGTCGAGCGTTTC 116815 ||||||| ||||| ||||| ||| Sbjct 1133 ACGAGAACCTGGTGGAGCGCTTC 1155 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 116632 GGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGA 116691 |||||| ||| ||||||||| || || |||||||| |||||||| ||||||||||| || Sbjct 861 GGACATCTGGGACATGTACAAGAAAGCAGAGGCGTCCTTCTGGACAGTCGAGGAGGTTGA 920 Query 116692 CCTGTCCAAGGACACGAGCGACTGGGA 116718 ||| ||||| ||| | |||||||| Sbjct 921 CCTCTCCAAAGACCAGGCAGACTGGGA 947 >seq1153379 Length=123 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 116819 CAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAAC 116878 |||||| | |||||| | ||||| || ||||||||||| || ||||||||||| |||||| Sbjct 117 CAGGAGATACAGGTGCCTGAGGCACGCTGCTTCTACGGATTCCAGATCGCCATCGAGAAC 58 Query 116879 GTGCACTCGGAAATGTA 116895 | |||||||| ||||| Sbjct 57 ATCCACTCGGAGATGTA 41 >seq831659 Length=112 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 40791 GGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCG 40850 ||||||||| | |||||||| || || |||| ||| || || ||||| || || | || Sbjct 112 GGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTTGAAGATGGCCG 53 Query 40851 CACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||||||||||||||| ||| |||| || || Sbjct 52 CACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCA 11 >seq497311 Length=100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 40788 AGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGA 40847 |||||||||||| | |||||||| || || |||| || || || |||||||| || | Sbjct 1 AGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGG 60 Query 40848 GCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCAC 40886 |||||||| ||||||||||||||||| ||| |||| Sbjct 61 CCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCCAC 99 >seq2371163 Length=190 Score = 82.4 bits (90), Expect = 8e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| |||||||||||||| | || ||||| | | Sbjct 47 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGT 106 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | || || | ||||||||||||||||| | |||||| Sbjct 107 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 166 Query 40810 CAACGACTCATCT 40822 || || || |||| Sbjct 167 CAGCGTCTGATCT 179 >seq1385232 Length=127 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 40788 AGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGA 40847 |||||||||||| | |||||||| || || |||| || || || |||||||| || | Sbjct 127 AGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGG 68 Query 40848 GCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 || ||||| ||||||||||||||||| ||| |||| || || Sbjct 67 CCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTCCA 23 >seq129324 Length=390 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 40795 ATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACC 40854 ||||| | |||||||| || || |||| ||| || || |||||||| || | |||||| Sbjct 295 ATCCCACCAGACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACC 354 Query 40855 CTCAACGACTACAACATCCAGAAGGAGGCCACGCT 40889 || |||||||||||||||||| ||| |||| || Sbjct 355 CTGTCCGACTACAACATCCAGAAAGAGTCCACCCT 389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495856888930080