Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1854222 113 4e-20 seq831659 96.9 3e-15 seq831658 91.5 1e-13 seq2371163 87.8 2e-12 seq831657 87.8 2e-12 seq824347 87.8 2e-12 seq1574934 82.4 6e-11 seq1385232 82.4 6e-11 >seq1854222 Length=138 Score = 113 bits (124), Expect = 4e-20 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || |||||||| || |||||||| ||| || ||||| |||||| Sbjct 131 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCC 72 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| ||||||||| |||| ||||||||||| || || || |||||||| |||||| Sbjct 71 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCT 15 >seq831659 Length=112 Score = 96.9 bits (106), Expect = 3e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || |||||||| || |||||||| ||| || ||||| ||| || Sbjct 5 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCA 64 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCC 118637 ||||| ||||||||| |||| ||||||||||| || || || |||||| Sbjct 65 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCC 112 >seq831658 Length=112 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || |||||||| || |||||||| || | |||||| ||| || Sbjct 5 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 64 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCC 118637 ||||| ||||||||| |||| ||||||||||| || || || |||||| Sbjct 65 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCC 112 >seq2371163 Length=190 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| || |||| ||||||||||| || || || |||||||| |||||| || || Sbjct 189 TTTCCTGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTTG 130 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | |||| |||||| | ||||||||| | || | |||||||| || Sbjct 129 GCTTTGACATTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTGATGGTTTTGCCTGTG 70 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || |||||||| Sbjct 69 AGGGTTTTGACGAAGATCTGCAT 47 >seq831657 Length=112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| |||| ||||||||||| || |||||||| || | |||||| ||| || Sbjct 5 ACCAAATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCA 64 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCC 118637 ||||| ||||| ||| |||| ||||||||||| || || || |||||| Sbjct 65 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCC 112 >seq824347 Length=112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || |||||||| || |||||||| || || ||||| ||| || Sbjct 108 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCA 49 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCC 118637 ||||| ||||| ||| |||| ||||||||||| || || || |||||| Sbjct 48 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCC 1 >seq1574934 Length=127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||||||||||| ||||||||||| || || |||||| ||| || Sbjct 38 ACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTCAGACAGAGTGCGGCCATCTTCC 97 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGC 118619 ||||| ||||| || |||| ||||||||| Sbjct 98 AGCTGCTTTCCTGCAAAGATCAGACGCTGC 127 >seq1385232 Length=127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || |||||||| || |||||||| || || || || ||| || Sbjct 17 ACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCC 76 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTC 118639 ||||| ||||| || |||| ||||||||||| || || || |||||||| Sbjct 77 AGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTC 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417934330564936