Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq103958 98.7 1e-15 seq2830548 96.9 5e-15 seq2660963 93.3 6e-14 seq2630953 86.0 9e-12 >seq103958 Length=1487 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 97191 ATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAAT 97250 |||||| ||| ||| ||||| || || |||||||| || ||||||||| || || Sbjct 541 ATCGTGCAGGCCCAGACGGAGACCGGTACCCCGTACATGCTGTACAAGGATGCCTGCAAC 600 Query 97251 CGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATT 97310 | || || ||||||| || |||||||||||||| || || ||||||||||| ||| Sbjct 601 AGTAAGAGTAACCAACAGAACCTGGGCACCATCAAGTGCAGTAACCTGTGCACGGAGATT 660 Query 97311 GTAGAGTACGCCTCTCCGGACGAG 97334 | |||||| || ||||||||| Sbjct 661 ATCGAGTACTCCAGCCCGGACGAG 684 >seq2830548 Length=329 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 97179 CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAG 97238 || ||| ||||||||||| ||| ||| ||||| || || |||||||| || |||||| Sbjct 46 CTCTGGCAGGCCATCGTGCAGGCCCAGACGGAGACCGGTACCCCGTACATGCTGTACAAG 105 Query 97239 GATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTG 97298 ||| || || |||| || ||||||| || |||||||||||||| || || ||| Sbjct 106 GATGCCTGCAACAGCAAGAGTAACCAACAGAACCTGGGCACCATCAAGTGCAGTAACCTG 165 Query 97299 TGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 || || || || | |||||| | ||||||||| Sbjct 166 TGTACCGAGATCATTGAGTACTCGAGCCCGGACGAG 201 >seq2660963 Length=245 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 125413 CGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTT 125472 |||||| ||| || | ||||| |||||||||||||||||||| ||||| ||||| | Sbjct 97 CGTACGGCGAGCGAGTTGTGGCCTTCGCCGCCGTAGAGGGCATTTTCTTCTCGGGGTCCT 156 Query 125473 TTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACG 125532 |||| ||||||| ||||| |||||| | ||| |||| ||| ||||| | || | Sbjct 157 TTGCCTCCATCTTCTGGCTGAAGAAGAGAGGAAAGATGCACGGTTTGACGTTCTCCAATG 216 Query 125533 AGTTTATATCTCGAGACGAGG 125553 || | || |||||| |||| Sbjct 217 AGCTGATCAGTCGAGATGAGG 237 >seq2630953 Length=237 Score = 86.0 bits (94), Expect = 9e-12 Identities = 102/137 (74%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAA- 97042 || ||| ||||| | ||||| | ||||||| | ||||| ||||||||| |||||| | Sbjct 52 CGGGCCCGGGACCTCTTTTACGGACTCTGGATACCAGACCTGTTCATGAGGCGCGTGGAG 111 Query 97043 --CGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||||| | ||||| |||| ||||||||| || || || || |||| |||||| Sbjct 112 ACCGACGAAG---ACTGGTGCCTGATGTGCCCCAACGAGTGCCCGGGCTTGTCAGATTGC 168 Query 97101 TGGGGCGAAGAGTTTGA 97117 ||||| || || ||||| Sbjct 169 TGGGGGGAGGACTTTGA 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713209657996080