Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2986189 102 2e-16 seq198113 89.7 1e-12 >seq2986189 Length=758 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 268853 ATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTC 268912 || || || || ||||||| ||||||||||| || || || || || ||||||| ||| Sbjct 384 ATCCTGGCCTTCTTTGCAGCAAGTGATGGTATAGTCAATGAGAACCTCGTAGAGAGGTTT 325 Query 268913 TGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 |||| |||||||| |||||||| || |||||||| || || |||||||| | ||| || Sbjct 324 AGTCAGGAGGTACAAATTCCTGAGGCAAGATGTTTCTATGGCTTCCAGATGGTTATGGA 266 >seq198113 Length=2368 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 268865 TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTA 268924 ||||||| ||||||||||| || || || || || ||||||| ||| |||| ||||| Sbjct 3 TTTGCAGCAAGTGATGGTATAGTCAATGAGAACCTCGTAGAGAGGTTTAGTCAGGAGGTC 62 Query 268925 CAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 ||||||||||| || ||||| || || || |||||| | | ||| || Sbjct 63 CAGATTCCTGAGGCAAGATGCTTCTATGGCTTCCAGGTGGTTATGGA 109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107046253698264