Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_007805.1 Length=39199 Score E Sequences producing significant alignments: (Bits) Value seq481880 91.5 4e-14 >seq481880 Length=40534 Score = 91.5 bits (100), Expect = 4e-14 Identities = 242/368 (66%), Gaps = 4/368 (1%) Strand=Plus/Plus Query 4612 ATCCACTCCCCGGGCGGCGACGTCTTCGAGGGGACGGCGATCTATAACCTACTGCGCAAC 4671 |||||||| || ||||| || || || || ||| || || ||| | || || || Sbjct 4574 ATCCACTCTCCTGGCGGGTCGGTGTTTGAAGGTTTGGCCATTTACAACATGCTTCGTAAT 4633 Query 4672 CACCCGGCCAGCGTCGACGTGTACATCGATGGCTTGGCTGCCTCGATGGCCTCGGTCATC 4731 ||||| || | || ||||| | |||||||| |||| || || || || || || ||| Sbjct 4634 CACCCAGCAACGGTGAACGTGCATATCGATGGACTGGCCGCTTCTATTGCATCCGTGATC 4693 Query 4732 GCCATGGCCGGCGACACCATCTACATGCCCGAGAACGCCATGATGATGGTGCATAAGCCC 4791 || ||||| || ||||| ||| || || || || || | | ||| | || ||||| Sbjct 4694 GCAATGGCGGGGGACACAATCACTATCCCTGAAAATGCATTTTTAATGATCCACAAGCCT 4753 Query 4792 TGGG--GCATCCAGGGCGGCGATGCGGACGACATGCGCCGCTATGCCGAACTGCTCGACA 4849 ||| | ||| | | || |||||| | | || |||| || |||||||| | Sbjct 4754 TGGAATGTTTCCCAAG--GTGACGCGGACAAGCTCCGTGATGATGCGGATCTGCTCGATA 4811 Query 4850 AGGTCGAGGACACCCTGGTCATGGCCTATGCCAACAAGACCGGGAAGTCCGCCGACGACA 4909 | ||||| | | || | |||||| |||||| |||||| ||| ||||| Sbjct 4812 AAATCGAGAAAAGTTTGCTTGCGGCCTACCGCAACAAAACCGGGCTTCCCGATGACGAAC 4871 Query 4910 TCAAGGCGCTCCTCAAGGAGGAGACCTGGATGAATGGCCGAGAGGCCGTCGCTGCCGGCT 4969 ||| || | || | ||| || ||||||||||| |||||||||| || | Sbjct 4872 TCACTGCCATGATCGCTGCGGAAACGTGGATGAATGGTGCTGAGGCCGTCGAAAAGGGTT 4931 Query 4970 TCGCCGAC 4977 |||||||| Sbjct 4932 TCGCCGAC 4939 Score = 84.2 bits (92), Expect = 5e-12 Identities = 296/457 (65%), Gaps = 4/457 (1%) Strand=Plus/Plus Query 719 GAATCCTCGTACAACGAGGGCAAGTGGAAGACGGCGCCATTTCAGGTCGCCATCCTGAAC 778 ||||| || || |||| || ||||| ||| || || || || || ||| | ||| Sbjct 776 GAATCTTCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAAC 835 Query 779 GCCATGGGTAACGACCTGATTCGGGTCGTAAACTTCGTGAAGTCGGCACGCATCGGCTAC 838 || ||||| || || || || || ||| | || |||||||| || | || ||| Sbjct 836 GCAATGGGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTAC 895 Query 839 ACGAAAATGCTGATGGCCAACATCGGCTACAAGATTCAGCACAAGCGCCGTAATGTGCTG 898 || || ||||| | || || | ||| | | |||||||||| || || || ||| Sbjct 896 ACCAAGATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACGTACTG 955 Query 899 ATGTGGAGCCCGACTGACCCAGACGCCGAGGGGATCAGCAAGAGCCACGTTAATGGCCTG 958 || ||||| || | ||||| ||| | | || | |||||| || Sbjct 956 TCGTTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCA 1015 Query 959 ATTCGCGATGTTCCGGTGCTGCTGGCGCTGGCCCCATGGTATGGCCGCAAGCATAGCGAC 1018 ||||| ||||||||| |||| || ||| ||||| |||| || ||||| | || Sbjct 1016 ATTCGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGAT 1075 Query 1019 AACACGCTCGACACCAAGGTGTTTGCAAACCGGCGGACCCTT-TGGACGCTCGGCGGCAA 1077 |||||| | || ||| ||| | ||| ||| | || | | | |||||| || Sbjct 1076 AACACGTTAGATCAGAAGCGGTTCTCTAAC-GGCAAGCAATTATTCATACGCGGCGGTAA 1134 Query 1078 GGCTGCTCGCAACTACCGTGAGAGATCTGCCGACGAGGTGATCTATGACGAGCT-GTCGA 1136 ||| ||| | ||||||||||| | || || || | || | ||||||||||| | || Sbjct 1135 GGCGGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGC 1194 Query 1137 AGTTCGACGCCGATATTGAAGGTGAAGGTTCCCCAAC 1173 | ||||| ||||||||| ||||| || || || Sbjct 1195 A-TTCGATAAGGATATTGAAAAAGAAGGATCGCCGAC 1230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120841235733956