Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1548990 140 2e-28 seq1494811 136 3e-27 seq1349690 136 3e-27 seq100468 127 1e-24 seq1507365 125 5e-24 seq1507364 125 5e-24 seq398446 122 6e-23 seq1342854 120 2e-22 seq129135 111 1e-19 seq2820220 107 1e-18 seq1582040 107 1e-18 seq226038 107 1e-18 seq2953061 104 2e-17 seq2681976 104 2e-17 seq1284430 104 2e-17 seq2858290 96.9 2e-15 seq1538663 96.9 2e-15 seq1538662 96.9 2e-15 seq1500091 96.9 2e-15 seq1566970 93.3 3e-14 seq1566969 93.3 3e-14 seq1566968 93.3 3e-14 seq106402 87.8 1e-12 seq1599562 86.0 4e-12 seq1391417 86.0 4e-12 seq1331127 84.2 1e-11 seq606322 84.2 1e-11 seq341544 84.2 1e-11 >seq1548990 Length=127 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG-----GGGGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct 16 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGGGGGAATCTCGT 75 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 76 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 110 >seq1494811 Length=127 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| Sbjct 29 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGGAGATAGGGACAGTGGGAATCTCGT 88 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 89 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 123 >seq1349690 Length=127 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||||| |||||| || |||||||| Sbjct 101 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTATATAGGGACAGTGGGAATCTCGT 42 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 41 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7 >seq100468 Length=1120 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 767 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 826 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 827 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 861 >seq1507365 Length=127 Score = 125 bits (138), Expect = 5e-24 Identities = 81/89 (91%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||||||||||||||| || |||||||| Sbjct 39 AAGCCCGTTCCCTTGGCTGTGGTTTAGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 98 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGA 25985 |||||| |||||||||||||||||||||| Sbjct 99 TAATCCATTCATGCGCGTCACTAATTAGA 127 >seq1507364 Length=127 Score = 125 bits (138), Expect = 5e-24 Identities = 81/89 (91%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||||||||||||||| || |||||||| Sbjct 39 AAGCCCGTTCCCTTGGCTGTGGTTTGGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 98 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGA 25985 |||||| |||||||||||||||||||||| Sbjct 99 TAATCCATTCATGCGCGTCACTAATTAGA 127 >seq398446 Length=4370 Score = 122 bits (134), Expect = 6e-23 Identities = 72/75 (96%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 903 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 844 Query 20007 GGTAATATTTAGCCT 20021 ||| |||||||| || Sbjct 843 GGTCATATTTAGTCT 829 >seq1342854 Length=127 Score = 120 bits (132), Expect = 2e-22 Identities = 78/86 (91%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||||||||||||||| || |||||||| Sbjct 86 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 27 Query 25957 TAATCCTTTCATGCGCGTCACTAATT 25982 |||||| ||||||||||||||||||| Sbjct 26 TAATCCATTCATGCGCGTCACTAATT 1 >seq129135 Length=5968 Score = 111 bits (122), Expect = 1e-19 Identities = 81/94 (86%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 |||||||||||||||||||| ||||||||||||||||||||| || ||||||||| Sbjct 2311 AGCCCGTTCCCTTGGCTGTGAATTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 2370 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || | ||||||||||||| ||||||||||| || Sbjct 2371 AACACATTCATGCGCGTCATTAATTAGATGATGA 2404 >seq2820220 Length=321 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 56 CTCTCTTTTCAAAGTGCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 115 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||| ||| Sbjct 116 GCCAATATTTAGCTTTA 132 >seq1582040 Length=127 Score = 107 bits (118), Expect = 1e-18 Identities = 71/79 (90%), Gaps = 5/79 (6%) Strand=Plus/Plus Query 25918 CTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGC 25972 |||||||||||||||||||||||||||| || |||||||||||||| ||||||||| Sbjct 1 CTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGC 60 Query 25973 GTCACTAATTAGATGACGA 25991 ||| ||||||||||||||| Sbjct 61 GTCCCTAATTAGATGACGA 79 >seq226038 Length=3643 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | Sbjct 501 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCC 442 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 441 ACCAATATTTAGCTTTA 425 >seq2953061 Length=531 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 81 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 140 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 141 GCCGGTATTTAGCCTTA 157 >seq2681976 Length=252 Score = 104 bits (114), Expect = 2e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 6333 TTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATCGTT 6392 || || ||||| || || |||||||| || ||||| ||| ||||||||||||||||| Sbjct 189 TTTGGCTGCGAGCTCGGGGCTCAGACTCAATTTGACTTCAAGAACGAGCGCTTCATCGTG 130 Query 6393 AACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAGTTT 6452 || || || || | |||||| ||||||| | || |||| ||| || | |||| | Sbjct 129 AATGGCTCCCACGATGTGGCCAAGTTGCAGGATCTCCTGGACGTCTTCATCAGGAAGTAT 70 Query 6453 GTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 |||||||||| || ||||| ||||| || || Sbjct 69 GTGCTGTGTCCCGAGTGCGACAACCCAGAAAC 38 >seq1284430 Length=126 Score = 104 bits (114), Expect = 2e-17 Identities = 71/79 (90%), Gaps = 6/79 (8%) Strand=Plus/Plus Query 25919 TGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCG 25973 ||||||||||||||||||||||||||| || |||||||||||||| |||||||||| Sbjct 1 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 60 Query 25974 TC-ACTAATTAGATGACGA 25991 || |||||||||||||||| Sbjct 61 TCAACTAATTAGATGACGA 79 >seq2858290 Length=354 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| ||||||||| ||||||||||| |||||||||||| | Sbjct 165 CTCTCTTTTCAAAGTCCTTTTCATCTTTCCCTCGCGGTACTTGTTTGCTATCGGTCTCTC 224 Query 20007 GGTAATATTTAGCCTT 20022 | |||||||||||| Sbjct 225 GCCCATATTTAGCCTT 240 >seq1538663 Length=127 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| Sbjct 78 CTCTCTCTTCAGAGGGCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGTCTCGT 19 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 18 GCAGGTATTTAGCCTT 3 >seq1538662 Length=127 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| || |||||||||||||||||||||||||||| |||||||||||||| Sbjct 78 CTCTCTCTTCAGAGAGCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGTCTCGT 19 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 18 GCAGGTATTTAGCCTT 3 >seq1500091 Length=127 Score = 96.9 bits (106), Expect = 2e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||| Sbjct 101 CTCTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGGACTTGTGCGCTATCGGTCTCGT 42 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||||| Sbjct 41 GCAGGTATTTAGCCTT 26 >seq1566970 Length=127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1 CTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGTCTCGTGC 60 Query 20009 TAATATTTAGCCTT 20022 |||||||||| Sbjct 61 AGGCATTTAGCCTT 74 >seq1566969 Length=127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1 CTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGTCTCGTGC 60 Query 20009 TAATATTTAGCCTT 20022 |||||||||| Sbjct 61 AGGAATTTAGCCTT 74 >seq1566968 Length=127 Score = 93.3 bits (102), Expect = 3e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 ||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||| | Sbjct 1 CTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGTCTCGTGC 60 Query 20009 TAATATTTAGCCTT 20022 |||||||||| Sbjct 61 AGGGATTTAGCCTT 74 >seq106402 Length=2347 Score = 87.8 bits (96), Expect = 1e-12 Identities = 57/63 (90%), Gaps = 5/63 (8%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 712 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 771 Query 25958 AAT 25960 ||| Sbjct 772 AAT 774 >seq1599562 Length=127 Score = 86.0 bits (94), Expect = 4e-12 Identities = 56/62 (90%), Gaps = 5/62 (8%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 62 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3 Query 25957 TA 25958 || Sbjct 2 TA 1 >seq1391417 Length=127 Score = 86.0 bits (94), Expect = 4e-12 Identities = 52/55 (95%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGT 20001 ||||||||||| ||| |||||||||||||||||||||||||||| |||||||||| Sbjct 55 CTCTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTGCGCTATCGGT 1 >seq1331127 Length=127 Score = 84.2 bits (92), Expect = 1e-11 Identities = 55/61 (90%), Gaps = 5/61 (8%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 61 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2 Query 25957 T 25957 | Sbjct 1 T 1 >seq606322 Length=104 Score = 84.2 bits (92), Expect = 1e-11 Identities = 55/61 (90%), Gaps = 5/61 (8%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 61 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 2 Query 25957 T 25957 | Sbjct 1 T 1 >seq341544 Length=690 Score = 84.2 bits (92), Expect = 1e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 19960 GTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATTTAGC 20019 |||||||||| |||||||||||||||||||||| |||||||||| | | | |||||||| Sbjct 99 GTTCTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGGTCTTTCAGGAGTATTTAGC 40 Query 20020 CTTA 20023 |||| Sbjct 39 CTTA 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322674330352598