Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1302992 100 6e-16 seq89842 98.7 2e-15 seq1989091 96.9 7e-15 seq1646485 96.9 7e-15 seq18668 95.1 2e-14 seq2002346 91.5 3e-13 seq863490 91.5 3e-13 seq2371919 87.8 4e-12 seq2053850 87.8 4e-12 seq1663756 87.8 4e-12 seq1311215 87.8 4e-12 seq426439 87.8 4e-12 seq117662 87.8 4e-12 seq34287 87.8 4e-12 seq1586274 86.0 1e-11 >seq1302992 Length=127 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 93 AGCCCGGTTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCCCAGGGTCGTGGGTTCGAG 34 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 33 CCCCACATCGGGC 21 >seq89842 Length=2788 Score = 98.7 bits (108), Expect = 2e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 2711 AGCCCGGTTAGCTCAGTCGGTAGAGCATGTGACTCTTAATCCCAGGGTCGTGGGTTCGAG 2770 Query 142563 CCCCACATCGGGCA 142576 |||||||||||||| Sbjct 2771 CCCCACATCGGGCA 2784 >seq1989091 Length=149 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| Sbjct 92 AGCCCGGTTAGCTCAGTCGGTAGAGCATTGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 33 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 32 CCCCACATTGGGC 20 >seq1646485 Length=127 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 105 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCACAGGGTCGTGGGTTCGAG 46 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 45 CCCCACATCGGGC 33 >seq18668 Length=1623 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/74 (91%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAA-TCTAGTGGTCGTGGGTTCGA 142561 |||||||||||||||||||||||||| ||||||||| || || |||||||||||||| Sbjct 323 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATTCCAG-GGTCGTGGGTTCGA 381 Query 142562 GCCCCACATCGGGC 142575 |||||||||||||| Sbjct 382 GCCCCACATCGGGC 395 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 492 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGAGTCGTGGGTTCGAG 551 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 552 CCCCACATCGGGC 564 >seq2002346 Length=150 Score = 91.5 bits (100), Expect = 3e-13 Identities = 66/74 (89%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCT-AGTGGTCGTGGGTTCGA 142561 |||||||||||||||||||||||||| ||||||||||| |||| |||||||||||| Sbjct 132 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGTG-TCGTGGGTTCGA 74 Query 142562 GCCCCACATCGGGC 142575 ||||||||| |||| Sbjct 73 GCCCCACATTGGGC 60 >seq863490 Length=114 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| Sbjct 88 AGCCCGGTTAGCTCAGTCGGTAGAGCATGTGACTCTTTATCACTGGGTCGTGGGTTCGAG 29 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 28 CCCCACATCGGGC 16 >seq2371919 Length=190 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| ||||||| |||| || Sbjct 70 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGTGTTCAAG 129 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 130 CCCCACATCGGGC 142 >seq2053850 Length=155 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| |||||||||||| || Sbjct 1 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCCAG 60 Query 142563 CCCCACATCGGGC 142575 ||||||||| ||| Sbjct 61 CCCCACATCTGGC 73 >seq1663756 Length=127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| ||||||||||||||||||||| ||||||||||| | ||||||||||||| Sbjct 18 AGCCTGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGTTCGTGGGTTCGAG 77 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 78 CCCCACATCGGGC 90 >seq1311215 Length=127 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||| ||||||||||||| ||||||| ||||||||||| ||||||||||||||| Sbjct 46 AGCCTGGTTAGCTCAGTCCGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 105 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 106 CCCCACATCGGGC 118 >seq426439 Length=684 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 459 AGCCCGGTTAGCTCAGTCGGTAGAGTATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 400 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 399 CCCCACATTGGGC 387 >seq117662 Length=1215 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 || ||||||||||||||||||||||| ||||||||||| ||| ||||||||||| Sbjct 935 AGACCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTTGTGGGTTCGAG 994 Query 142563 CCCCACATCGGGC 142575 ||||||||||||| Sbjct 995 CCCCACATCGGGC 1007 >seq34287 Length=855 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| ||||||||||| |||||||||||| || Sbjct 1 AGCCCGGTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCCAG 60 Query 142563 CCCCACATCGGGC 142575 ||| ||||||||| Sbjct 61 CCCAACATCGGGC 73 >seq1586274 Length=127 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 70 AGCCCGCTTAGCTCAGTCGGTAGAGCATGGGACTCTTAATCCCAGGGTCGTGGGTTCGAG 11 Query 142563 CCCCACATCG 142572 |||||||||| Sbjct 10 CCCCACATCG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988244276571178