Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2660963 149 1e-30 seq103958 123 5e-23 seq348554 120 6e-22 seq2830548 118 2e-21 seq1579977 89.7 9e-13 seq244905 87.8 3e-12 seq2172454 84.2 4e-11 >seq2660963 Length=245 Score = 149 bits (164), Expect = 1e-30 Identities = 169/225 (75%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| | || ||| ||||| |||| || |||||||| | ||| Sbjct 15 CTGTTCAACGCCATTGAGACCCTACCTTGCGTCAAGCAGAAAGCTGACTGGGCATTGAAC 74 Query 42669 TGGATCGAG--AGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| | || | |||| |||| ||||||| | | || ||||| ||||||| | Sbjct 75 TGGATCAACTCAGACTCGACC--ACGTACGGCGAGCGAGTTGTGGCCTTCGCCGCCGTAG 132 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGA 42786 ||||||| ||||||||||| |||| ||||||||||||||||| ||| ||| | || Sbjct 133 AGGGCATTTTCTTCTCGGGGTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGAAAGA 192 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| ||| | || ||||| || || || ||||| | || |||| Sbjct 193 TGCACGGTTTGACGTTCTCCAATGAGCTGATCAGTCGAGATGAGG 237 >seq103958 Length=1487 Score = 123 bits (136), Expect = 5e-23 Identities = 110/138 (80%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| |||| | ||| ||||| || |||||| ||||| |||||||||||||||||||| Sbjct 687 CACCTCGTCCGGGCTGGAGTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGT 628 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || || ||| ||||||||| |||||||| |||||| | || Sbjct 627 GCCCAGGTTCTGTTGGTTACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGGGGT 568 Query 244825 CCCGGTCTCGAGCTGGGC 244842 |||||||| |||||| Sbjct 567 ACCGGTCTCCGTCTGGGC 550 >seq348554 Length=3857 Score = 120 bits (132), Expect = 6e-22 Identities = 149/202 (74%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 244325 TTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAG 244384 ||||| | |||| ||| ||||| ||| ||||| || || ||| || | ||| Sbjct 3112 TTGCTCGCTGGGCAGCCGTCGTAAGTCTCGTAGGTTCCTAACTCCTTGGCGAGATCGCAG 3171 Query 244385 CT--CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGG 244442 || |||| ||| |||||||||||||||||||| |||||| |||||| | ||| Sbjct 3172 CTTGCTCG--GAGAGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCTTCTGGG 3229 Query 244443 CCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGC 244502 ||| | || ||||||| ||||||| | ||||| |||||||||| |||||||||| Sbjct 3230 CCTCGGGGCTCTCAAAGGGGAAGCCCATCTTGATGAAAGCGTCGGCCAGGCCCTGCACGC 3289 Query 244503 CGATGCCGATGGGTCTGTGTCG 244524 ||||||| ||||||| ||| || Sbjct 3290 CGATGCCAATGGGTCGGTGACG 3311 >seq2830548 Length=329 Score = 118 bits (130), Expect = 2e-21 Identities = 152/207 (73%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| |||| | | | ||||| | |||||||| || |||||||||||||||||||| Sbjct 204 CACCTCGTCCGGGCTCGAGTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGT 145 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 |||||||| ||| || || |||| ||||||||| |||||||| |||||| | || Sbjct 144 GCCCAGGTTCTGTTGGTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGT 85 Query 244825 CCCGGTCTCGAGCTGGGC---GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGT 244881 |||||||| |||||| |||| | | ||| |||||| | | ||||||| | | Sbjct 84 ACCGGTCTCCGTCTGGGCCTGCACGATGGC-CTG--CCAGAGATACTGGGCCTTGATCTT 28 Query 244882 CCTGCGAGCCTTGCCCTCTGCCTCGTA 244908 | |||| || ||||| |||||| Sbjct 27 CTTGCGGAATTTCCCCTCACTCTCGTA 1 >seq1579977 Length=127 Score = 89.7 bits (98), Expect = 9e-13 Identities = 92/120 (77%), Gaps = 3/120 (3%) Strand=Plus/Plus Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTC 42902 ||||||||||||||| ||||| ||||| ||| ||||||||| | |||| || || Sbjct 5 GACTTTGCCTGCCTCATGTTC---AGCCATCTCGTCCACAAGCCCACAGAGGAACGCATC 61 Query 42903 CGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC 42962 | |||||||| |||||| || |||| ||| |||||||||||||| | | |||||| Sbjct 62 AAGTTCATCATCAAGGAGGCAGTCAAGATTGAGCAGGAGTTCCTCACGGACGCACTGCCC 121 >seq244905 Length=747 Score = 87.8 bits (96), Expect = 3e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||||||||| |||||| |||||||| ||||| |||||||||| |||||| Sbjct 54 TGGCCTTCTTTGCCGCCAGCGACGGCATCGTCAACGAGAACCTGGTGGAGCGGTTCAGCC 113 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 | ||| | ||| |||||| |||||||||||||| |||||||| ||||| ||| Sbjct 114 AGGAGATACAGGTGCCTGAGGCACGCTGCTTCTACGGATTCCAGATCGCCATCGAG 169 >seq2172454 Length=167 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||| || || || || ||||| | ||| ||||| ||| ||| || ||||| ||| Sbjct 13 ACCTGGAATTCCCCGGAGAGCACCCTGCGGGTGTAGATGTTACTGGTGTAGGGCTCAATG 72 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| | |||||||| ||||| || ||| ||||| |||||||| | || ||| ||| Sbjct 73 GACTCGTTATTGCCCAGGATCTGGGCTGTGGAGGCAGTGGGCATGGGGGCCAGCAGGAGA 132 Query 244217 CTGTTCCTCACGCCGT 244232 |||||||| | |||| Sbjct 133 CTGTTCCTGAGCCCGT 148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 908850248218080