Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq2761418 167 7e-37 seq2785375 120 9e-23 seq2792065 84.2 6e-12 >seq2761418 Length=285 Score = 167 bits (184), Expect = 7e-37 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 42537 AGGCGAGGATCGACGCGCCGCCGATCCCGTCACCCCCCGTGCGCGCCGCGAAGAGGACGA 42596 |||| |||||||||||||| ||||| ||||| || || ||| ||| | ||||| |||| Sbjct 1 AGGCAAGGATCGACGCGCCACCGATACCGTCGCCACCGGTGGCCGCACCAAAGAGAACGA 60 Query 42597 CCTTGTTGCCTAGGCCCGTCGCGTTGGCGAGCTTGAGGTCCTCGTGCCGGAGCACGCCCA 42656 | ||||||| |||| || ||||||| || |||||||| || || ||||| || | Sbjct 61 CGAGATTGCCTACACCCGAGGCTTTGGCGAACTGTAGGTCCTCATGACGCAGCACCCCGA 120 Query 42657 CCGCCAGGGCGTTGACCAGCGGATTGGCCTGATAGACGGCATCGAACACGGTCTCGCCGC 42716 | |||||||||||| ||||||||| | | |||| || ||||| | ||||| ||||| Sbjct 121 CGCACAGGGCGTTGACGAGCGGATTGCCGTAATAGGTGGGGTCGAAGAGGGTCTGGCCGC 180 Query 42717 CGATGTTCGGCAGACCGAGGCAGTTGCCGTAG 42748 |||| | ||||| |||||||||||||| ||| Sbjct 181 CGATCGTGGGCAGGCCGAGGCAGTTGCCATAG 212 >seq2785375 Length=298 Score = 120 bits (132), Expect = 9e-23 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 42259 CATCCGCTCCTGCGACTCCGACATGAGGATCTCCTCGGCCGTGAGCGAGGGGTCGCGGAG 42318 |||||||||||| ||||| |||||||||||| || | | ||| |||||||| || Sbjct 60 CATCCGCTCCTGGGACTCGCTCATGAGGATCTCTTCAGGGGCGAGGTTCGGGTCGCGCAG 119 Query 42319 GAGCACGTTGTCGAGCGAGACGTGCATTCCGCTGTTGCCGTTGGCGGCGAGCTCGCTCGT 42378 | ||| ||||||| ||||||||| || | || ||| ||| |||||| || Sbjct 120 CGGAACGCGGTCGAGCTCGACGTGCATGCCACCGTCGCCAGCACTGGCCAGCTCGGAGGT 179 Query 42379 GGCGCAGGAGATGCCTGCAGCCCCGAGGTCCTGGATCGCCTCGACCAGCTCGTCGCGGTA 42438 ||| |||||||| || || || |||| ||||| | ||||| || | | || || | | Sbjct 180 GGCACAGGAGATTCCGGCGGCACCGAAATCCTGCAAAGCCTCAACTACCCCGGCGTTGAA 239 Query 42439 CAGCTCCAGGCAGCACTCGATGAGCACCTTCTCGGCGAAGGGGT 42482 || || ||| |||||||||||||| |||||| ||| |||| Sbjct 240 GAGGTCAAGGGTGCACTCGATGAGCAGCTTCTCCATGAACGGGT 283 >seq2792065 Length=302 Score = 84.2 bits (92), Expect = 6e-12 Identities = 173/255 (68%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 41661 CGAACTGCCACATGACCTCGGGATTCTCCGGGGAGCCGAAGTTCAGGCAGTCGGTGACCG 41720 |||| ||||||||||| ||||||| | ||||||||| | || ||||| || ||||| | Sbjct 46 CGAATTGCCACATGACATCGGGATCGTACGGGGAGCCATAATTGAGGCAATCAGTGACAG 105 Query 41721 CAGTGGGCACGGCGCCGGTGACCGCGACGTTGCGGTAGGCCTCGGCGAGGGCGAGCTGTG 41780 | || ||||| | ||| || || || ||||| |||||| || || ||||| | Sbjct 106 CCACCGGAGTTGCGCCAGAGACAGCCACATTCCGGTAAGCCTCGCAAAGAGCCAGCTGGG 165 Query 41781 CGCCCGCGTACGGGTCGAGCTGGCAGTAGCGGCCGTTCGCGTCGGTCGCGATCGCGAACC 41840 |||| ||||||| || | | ||| ||||| ||||| | | ||||| | Sbjct 166 CGCCAAGATACGGGTTAAGGGTGGTCTGGCGTCCGTTAGCGTCCAAGGACAGCGCGATGC 225 Query 41841 CGAGGCCCGACTCCTCATCGACGCGGATCATGCCGGCGTCG-TCGGGGAAGCTGAGGGCC 41899 ||||| | || || | || ||||||||||| ||| |||| ||| ||| | Sbjct 226 CGAGG------TTGTCGTCAATACGAATCATGCCGGCATCGTTCGGCTGAGC-GAGCACA 278 Query 41900 GTGTTGCCGAGCACG 41914 || ||||| ||||| Sbjct 279 GTATTGCCACGCACG 293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142953753168892