Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq103958 89.7 5e-13 seq2830548 84.2 2e-11 >seq103958 Length=1487 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 146664 CTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCC 146723 ||||||| | | | |||| | |||||| | ||| ||||| |||||||||||| |||| Sbjct 684 CTCGTCCGGGCTGGAGTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCC 625 Query 146724 CAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 || || | ||||||||| ||||||||| |||||||| ||||||||||| Sbjct 624 CAGGTTCTGTTGGTTACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGG 571 >seq2830548 Length=329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 146689 ATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG 146748 ||||||| || ||||| |||||||||||| |||||| || | ||||||||| || Sbjct 176 ATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTTACTCTTGCTG 117 Query 146749 TTGCAGGGGTCCTTGTAGAGCATGTACGG 146777 ||||||| |||||||| ||||||||||| Sbjct 116 TTGCAGGCATCCTTGTACAGCATGTACGG 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 457631135197920