Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq315344 98.7 1e-15 seq2172454 93.3 5e-14 seq103958 89.7 6e-13 seq2830548 87.8 2e-12 seq815070 82.4 9e-11 >seq315344 Length=497 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||||| ||||||| | |||| || || |||| ||| || ||||||||| Sbjct 312 TAGATGTTACTTGTGTAGGGCTCAATGGACTCGTTATTGCCCAGGATCTGAGCTGTGGAG 371 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || ||||||||||| |||| || || ||||| | ||| || | |||| || Sbjct 372 GCAGTGGGCATGGGGGCCAGCAGGAGACTGTTCCTGAGCCCGTACTTGGCAATGTCAGCC 431 Query 116023 TTGAGGGCGTCCCAGTCGT 116041 ||||||||| ||||||||| Sbjct 432 TTGAGGGCGGCCCAGTCGT 450 >seq2172454 Length=167 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 |||||||| | ||||| ||||||| | |||| || || |||| ||| |||||||||||| Sbjct 46 TAGATGTTACTGGTGTAGGGCTCAATGGACTCGTTATTGCCCAGGATCTGGGCTGTGGAG 105 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACC 116003 || ||||||||||| |||| || || ||||| | ||| || Sbjct 106 GCAGTGGGCATGGGGGCCAGCAGGAGACTGTTCCTGAGCCC 146 >seq103958 Length=1487 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| ||||| ||||| |||| || | ||| |||||||||| ||||| ||| || Sbjct 669 GTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 610 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| |||| || ||||||||||| ||||| || || || || |||||||| |||| Sbjct 609 ACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGGC 550 Query 116595 CT 116596 || Sbjct 549 CT 548 >seq2830548 Length=329 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 116475 GTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 116534 |||||| || || || ||||||| || | ||| |||||||||| ||||| ||| || Sbjct 186 GTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 127 Query 116535 TGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGA 116594 ||| |||| || ||||||||||| ||||| || || || || |||||||| |||| Sbjct 126 ACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGGC 67 Query 116595 CTTGAGAATAGCCTTCCA 116612 || | || |||| ||| Sbjct 66 CTGCACGATGGCCTGCCA 49 >seq815070 Length=112 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || ||||||| |||||| |||||||||||||| || || ||| ||| |||||||| Sbjct 94 GTACTCGCCGACCCTCTTCTCAAAGAAGTTTGTCTTGCCTTCTAGGGAGATGTTCTCCAT 35 Query 127291 AAAATCAAATGGGTT 127305 |||||||| ||||| Sbjct 34 GAAATCAAAGGGGTT 20 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590451154631280