Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq244905 118 1e-21 seq2924339 109 5e-19 seq1854222 89.7 5e-13 seq1551409 87.8 2e-12 seq128143 87.8 2e-12 >seq244905 Length=747 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 ||| |||||||| || || ||||| ||||| || ||||| |||||| | || || Sbjct 169 CTCGATGGCGATCTGGAATCCGTAGAAGCAGCGTGCCTCAGGCACCTGTATCTCCTGGCT 110 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| ||||| ||||| || |||||||||||||||||||||||||| || ||||||| || Sbjct 109 GAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCAAAGAAGGCCAAGAC 50 Query 133329 GTGCTTGATGAAATGGCGCTCGT 133351 ||| |||||| || | ||||| Sbjct 49 GTGGGAGATGAAGTGCCTCTCGT 27 >seq2924339 Length=450 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || || || ||||||| |||||||| || | ||| ||||| Sbjct 213 AAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGGCTGATCTTCGCCGGCAAG 154 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||||| ||||||||||||||| ||||| | || || || Sbjct 153 CAGCTGGAGGATGGGCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 94 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| | || | ||||| Sbjct 93 CTGGTGCTGAGGCTGCGGGGCGG 71 >seq1854222 Length=138 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||||||||| || || | ||||| ||||| || || | ||| || || Sbjct 7 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCTGGAAAG 66 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||| ||||||||||||||| || || | || || || Sbjct 67 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAC 126 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 127 TTGGTTCTCCGT 138 >seq1551409 Length=127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||| || Sbjct 124 GAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGAC 65 Query 133329 GTGCTTGATGAAATGGCGCTCGT 133351 || |||||| || | ||||| Sbjct 64 ATGGGAGATGAAGTGCCTCTCGT 42 >seq128143 Length=1990 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| ||||| ||||| || ||||||||||||||||||||||||||||| ||||||| || Sbjct 1155 GAAGCGCTCCACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCGAAGAAGGCCAAGAC 1096 Query 133329 GTGCTTGATGAAATGGCGCTCGT 133351 ||| |||||| || ||||| Sbjct 1095 GTGGGAGATGAAGTGCTTCTCGT 1073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481375943550720