Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1854222 105 1e-17 seq831658 96.9 7e-15 seq751460 93.3 9e-14 seq2371163 91.5 3e-13 seq831659 91.5 3e-13 seq824347 87.8 4e-12 seq1385232 86.0 1e-11 >seq1854222 Length=138 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| |||| || || | ||||| || Sbjct 132 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTC 73 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || |||||||| || || || |||||||| || ||||| ||||||||||| Sbjct 72 CAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTG 13 Query 195051 AATTTT 195056 || || Sbjct 12 GATCTT 7 >seq831658 Length=112 Score = 96.9 bits (106), Expect = 7e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | |||||| | |||||||| Sbjct 4 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 63 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| || |||||||| || || || |||||||| || ||||| Sbjct 64 AAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCC 111 >seq751460 Length=109 Score = 93.3 bits (102), Expect = 9e-14 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | |||||| | |||||||| Sbjct 106 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTC 47 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATG 195036 |||||||| ||||| ||||| || || || |||||||| || ||| Sbjct 46 CAGCTGCTTTCCTGCAAAGATCAGACGCTGCTGGTCTGGTGGGATG 1 >seq2371163 Length=190 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| ||||| ||||| || || || |||||||| || ||||| ||||||||||| || || Sbjct 190 CTTTCCTGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTT 131 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCC 195113 ||||| ||||| |||||||| |||| || || ||||| || | || || || Sbjct 130 GGCTTTGACATTCTCGATGGTGTC---ACTTGGCTCGACCTCAAGAGTGATGGTTTTGCC 74 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||||| ||||| | ||||| Sbjct 73 TGTGAGGGTTTTGACGAAGATCTGCAT 47 >seq831659 Length=112 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| |||| || || | |||||||| Sbjct 4 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTC 63 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| || |||||||| || || || |||||||| || ||||| Sbjct 64 AAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCC 111 >seq824347 Length=112 Score = 87.8 bits (96), Expect = 4e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 109 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 50 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 |||||||| || |||||||| || || || |||||||| || ||||| Sbjct 49 AAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCC 2 >seq1385232 Length=127 Score = 86.0 bits (94), Expect = 1e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| || ||||||||||| || || ||||| || | || || | |||||||| Sbjct 16 AACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTC 75 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| || || ||||| || || || |||||||| || ||||| ||| Sbjct 76 CAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCT 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1066744099025286