Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq185656 113 3e-19 seq1414010 95.1 9e-14 seq3000339 91.5 1e-12 seq2876419 87.8 1e-11 >seq185656 Length=1083 Score = 113 bits (124), Expect = 3e-19 Identities = 127/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 550352 AAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACT 550411 ||||||| | | |||||| | | | |||| | | | || | ||||| || || ||| Sbjct 125 AAAATGAGAGAGACAGCCGAGACGTATCTTGGGCTAAAGGTGAAAGATGCTGTCATCACT 184 Query 550412 GTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCT 550471 ||||| || || ||||| ||||| || | |||||||| |||||||| ||| |||||| Sbjct 185 GTACCGGCCTACTTTAACGACTCCCAGAGACAAGCTACCAAAGATGCCGGAGTGATTGCT 244 Query 550472 GGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTG 550520 || || |||||||| | || |||||||||||||| ||||| || |||| Sbjct 245 GGTCTCAATGTTCTCAGGATCATCAATGAACCTACGGCTGCCGC-CTTG 292 >seq1414010 Length=127 Score = 95.1 bits (104), Expect = 9e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 550399 TGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGC 550458 ||| || || || |||||||| || || |||||||| || || ||||| || |||||||| Sbjct 127 TGCCGTGATCACCGTACCAGCCTACTTCAATGACTCCCAGCGCCAAGCCACCAAAGATGC 68 Query 550459 TGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 |||| || ||||||| || || || ||||| |||||||| || || || ||||| Sbjct 67 TGGAGCCATCTCTGGACTCAACGTCCTACGTATCATCAATGAGCCCACGGCAGCTGC 11 >seq3000339 Length=1171 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||||| || || || ||||| ||||| ||| ||||| ||||| | || ||||| || Sbjct 778 AGCTATTGGCATTGACTTAGGCACCACTTATTCCTGTGTAGGTGTCTTCCAGAATGGCAA 837 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || || ||||||||||| ||||| ||| | ||||| || ||| ||| | ||||| Sbjct 838 AGTGGAGATCATTGCCAATGAACAAGGCAACCGTACTACGCCCAGTTACGTTGCCTTCAC 897 Query 550111 GGAAACTGA-ACATTTAGTTGGTGATGCAGCAAA 550143 || || || | | | | |||| ||||| || || Sbjct 898 CGACACCGAGAGACTCA-TTGGAGATGCGGCCAA 930 >seq2876419 Length=374 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550424 TTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTT 550483 || |||||||| || || ||||| || ||||||||||| || ||||||| || || Sbjct 2 TTCAATGACTCCCAGCGCCAAGCCACCAAAGATGCTGGCGCCATCTCTGGACTCAACGTC 61 Query 550484 CTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || ||||| |||||||| || || || ||||| | |||||||| || ||||| Sbjct 62 CTGCGTATCATCAATGAGCCCACGGCAGCTGCCATCGCATATGGTCTGGATAA 114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3870300941834420