Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2830548 114 2e-20 seq2172454 109 1e-18 seq315344 109 1e-18 seq348554 105 1e-17 seq103958 102 1e-16 >seq2830548 Length=329 Score = 114 bits (126), Expect = 2e-20 Identities = 124/158 (78%), Gaps = 6/158 (4%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| ||||||||||| |||||||| ||||| |||||||||||||||||| ||||| Sbjct 186 GTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 127 Query 213590 TGACT-TTGC-GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 ||| |||| |||| | ||||||||| |||||||| |||| |||||||| |||| Sbjct 126 --ACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGG 69 Query 213648 GACACCAGTATCTGGCT-CCAGAGGTACCTGGCCTTGA 213684 | | || || | || |||||| ||| |||||||| Sbjct 68 GCCTGCACGAT-GGCCTGCCAGAGATACTGGGCCTTGA 32 >seq2172454 Length=167 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || ||||||||||| | ||| | ||| ||||||||||| || Sbjct 12 TACCTGGAATTCCCCGGAGAGCACCCTGCGGGTGTAGATGTTACTGGTGTAGGGCTCAAT 71 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||| || ||||| ||||| || ||| ||| ||||||||||| |||| |||||| Sbjct 72 GGACTCGTTATTGCCCAGGATCTGGGCTGTGGAGGCAGTGGGCATGGGGGCCAGCAGGAG 131 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATG 213062 ||||||||| | |||| || | | ||| Sbjct 132 ACTGTTCCTGAGCCCGTACTTGGCTATG 159 >seq315344 Length=497 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 212915 TATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGAT 212974 || |||||| || || ||||||||||| | ||| | ||| ||||||||||| || Sbjct 278 TACCTGGAATTCCCCAGAGAGCACCCTGCGGGTGTAGATGTTACTTGTGTAGGGCTCAAT 337 Query 212975 GCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAG 213034 | |||||| || ||||| ||||| || ||| ||| ||||||||||| |||| |||||| Sbjct 338 GGACTCGTTATTGCCCAGGATCTGAGCTGTGGAGGCAGTGGGCATGGGGGCCAGCAGGAG 397 Query 213035 ACTGTTCCTCACTCCGTGCTCGCCGATG 213062 ||||||||| | |||| || | | ||| Sbjct 398 ACTGTTCCTGAGCCCGTACTTGGCAATG 425 >seq348554 Length=3857 Score = 105 bits (116), Expect = 1e-17 Identities = 145/201 (72%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 213142 CTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGC 213201 |||||||| | |||| ||| | ||||| ||||| || ||||||||| || |||| Sbjct 3110 CTTTGCTCGCTGGGCAGCCGTCGTAAGTCTCGTAGGTTCCTAACTCCTTGGCGAGATCGC 3169 Query 213202 AGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGG 213261 || || | || || |||||||||||||| ||||| |||| |||| ||||||| || Sbjct 3170 AGCTTGCTCGGAGAGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTCAGCTTCTGGG 3229 Query 213262 CCTCTGGGGACGTGAAGGGCATCATCATGCGTTG--GAACACATCAGCCAGCCCCTGGAC 213319 |||| ||| | ||||| | ||| ||| ||| | || ||||| ||||| || Sbjct 3230 CCTCGGGGCTCTCAAAGGGGAAGCCCAT--CTTGATGAAAGCGTCGGCCAGGCCCTGCAC 3287 Query 213320 CCCGATGCCGATGGGTCTGTG 213340 |||||||| ||||||| ||| Sbjct 3288 GCCGATGCCAATGGGTCGGTG 3308 >seq103958 Length=1487 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| || ||||| ||||||||||| ||||| |||||||||||||||||| ||||| Sbjct 669 GTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 610 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 ||| |||| | ||||||||| |||||||| |||| |||||||| ||||| Sbjct 609 ACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGG 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896525122014720