Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq315344 100 5e-16 seq2660963 96.9 6e-15 seq2172454 95.1 2e-14 seq2642936 87.8 3e-12 seq2830548 84.2 4e-11 >seq315344 Length=497 Score = 100 bits (110), Expect = 5e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| || || ||||||||||| | ||| | |||| ||| | || || ||| Sbjct 279 ACCTGGAATTCCCCAGAGAGCACCCTGCGGGTGTAGATGTTACTTGTGTAGGGCTCAATG 338 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||| ||||||||||||||||| ||| ||| ||||||||||| |||| ||| ||| Sbjct 339 GACTCGTTATTGCCCAGGATCTGAGCTGTGGAGGCAGTGGGCATGGGGGCCAGCAGGAGA 398 Query 221243 CTGTT 221247 ||||| Sbjct 399 CTGTT 403 >seq2660963 Length=245 Score = 96.9 bits (106), Expect = 6e-15 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 ||||| ||| | |||| || ||||| ||| || ||||| |||| ||||||||| Sbjct 24 GCCATTGAGACCCTACCTTGCGTCAAGCAGAAAGCTGACTGGGCATTGAACTGGATCAAC 83 Query 25855 AGCCAGAG-CG-CTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCT 25912 |||| || | |||| |||||||| | || ||||| || || || |||||||| | Sbjct 84 T--CAGACTCGACCACGTACGGCGAGCGAGTTGTGGCCTTCGCCGCCGTAGAGGGCATTT 141 Query 25913 TTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGC 25972 | ||| || || ||||| ||||||||||||| ||| ||| || | |||| ||| Sbjct 142 TCTTCTCGGGGTCCTTTGCCTCCATCTTCTGGCTGAAGAAGAGAGGAAAGATGCACGGTT 201 Query 25973 TGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || || ||||| ||||| ||||| | || |||| Sbjct 202 TGACGTTCTCCAATGAGCTGATCAGTCGAGATGAGG 237 >seq2172454 Length=167 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| || || ||||||||||| | ||| | |||| ||| | || || ||| Sbjct 13 ACCTGGAATTCCCCGGAGAGCACCCTGCGGGTGTAGATGTTACTGGTGTAGGGCTCAATG 72 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||| |||||||||||||| || ||| ||| ||||||||||| |||| ||| ||| Sbjct 73 GACTCGTTATTGCCCAGGATCTGGGCTGTGGAGGCAGTGGGCATGGGGGCCAGCAGGAGA 132 Query 221243 CTGTT 221247 ||||| Sbjct 133 CTGTT 137 >seq2642936 Length=240 Score = 87.8 bits (96), Expect = 3e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 222082 GGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT-CAGATCCAAAAACTCAAAAATGTCAG 222140 || ||||||||||||| |||| ||| ||| | ||| ||||| || ||||| ||||||| Sbjct 234 GGCCCGCTGCTCCTCCTTACCGTGGTTCTTCTTGCAG-TCCAAGAAATCAAAGATGTCAG 176 Query 222141 CGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 ||||||| |||||||| |||| ||| | || ||||| |||| Sbjct 175 CGTGCCAGGGCTCCAGGTAGATGGCAAAGGCACCGGGCCGCT 134 >seq2830548 Length=329 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 |||||||||| | | | |||| |||||||| ||||| ||||| |||||||||||||| Sbjct 204 CACCTCGTCCGGGCTCGAGTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGT 145 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||||| | || ||| ||||| ||| || |||||||| ||||| | || Sbjct 144 GCCCAGGTTCTGTTGGTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGT 85 Query 221851 GCCAGTCTCCAGCTGAGCC 221869 || |||||| ||| ||| Sbjct 84 ACCGGTCTCCGTCTGGGCC 66 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893938139003520