Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_019704.1 Length=44375 Score E Sequences producing significant alignments: (Bits) Value seq481880 178 4e-40 >seq481880 Length=40534 Score = 178 bits (196), Expect = 4e-40 Identities = 442/665 (66%), Gaps = 12/665 (2%) Strand=Plus/Plus Query 593 CCGCAACCGCAAACAGCAGTTGAATGGGCAGATGAGAATTATTATCTCCCGAAAGAGTCT 652 ||| ||||| || |||| || ||||| || ||||||| |||||| | | || ||| Sbjct 722 CCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCT 781 Query 653 GCCTACCAGGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAATGCGATG 712 | || || ||||| || ||| |||| |||| || || || || | || || ||| Sbjct 782 TCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATG 841 Query 713 GGTAATGACTATATTCGCGAGGTGAATGTCGTTAAATCGGCTCGTGTCGGCTACTCAAAA 772 || || || || | ||||| || || || |||||||| | || ||| | || Sbjct 842 GGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAG 901 Query 773 ATGTTGCTCGGCGTTTACGCATATTTCATCCAACATAAACAGCGTAACTCCCTAATATGG 832 ||| | |||| | | || || | | | | || || | || ||| || | | | Sbjct 902 ATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACG---TACTGTCG 958 Query 833 TTA---CCAACCGACGGTGATGCTGAAAACTTCATGAAGTCTCATGTAGAACCGACCATT 889 || || ||||| || ||||| || || || |||| || || | | ||| Sbjct 959 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCAATT 1018 Query 890 CGTGATATTCCGACGTTGCTGGCGCTTGCTCCCTGGTACGGTAAAAAACACCGGGACAAT 949 |||||| |||||||| || || |||||| || |||| ||| | || ||||| || || Sbjct 1019 CGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAAC 1078 Query 950 ACGCT-GAGCATGAAGCGTTTCTCGAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGGC 1008 ||| | || || |||||| ||||| || || || | | ||||||||||| Sbjct 1079 ACGTTAGATCA-GAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAAGGC 1137 Query 1009 TGCAAAAAACTACCGTGAAAAATCAGTTGATGTGGCTGGCTACGACGAGCTCGCCGCTTT 1068 || | ||||||||||||| || | |||||| | | || |||||||| ||||| || Sbjct 1138 GGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATT 1197 Query 1069 CGATGATGACATCGAGAAAGAAGGTTCTCCCACCTTTCTGGGTGATAAGCGTATTGAGGG 1128 |||| | || || || |||||||| || || ||| ||| |||||||||||| |||| || Sbjct 1198 CGATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGG 1257 Query 1129 TTC--TGTATGGCCGAAATCCATTCGCGGATCTACACCGAAAGTCAAAGGTATGTGCCAG 1186 ||| ||| || || || || || || || ||||| ||| | || |||||| Sbjct 1258 TTCGACGTACGG--TAAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCAG 1315 Query 1187 ATAGAAAGAGCTGCTAAGGAGTCTGAACATTTTCTTCGGTTCCATGTTCCATGCCCACAC 1246 || |||| ||||||| ||||| || | | || | || | || || ||||| ||| Sbjct 1316 ATTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCAC 1375 Query 1247 TGTGG 1251 || || Sbjct 1376 TGCGG 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136813101522852