Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_019717.1 Length=45366 Score E Sequences producing significant alignments: (Bits) Value seq481880 205 3e-48 >seq481880 Length=40534 Score = 205 bits (226), Expect = 3e-48 Identities = 449/666 (67%), Gaps = 14/666 (2%) Strand=Plus/Plus Query 593 CCAGAACCGCAAACAGCGGTTGAATGGGCAGATGAGAATTACTATCTCCCGAAAGAGTCT 652 || |||||| || |||| || ||||| || ||||||| ||||| | | || ||| Sbjct 722 CCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAATCT 781 Query 653 GCCTACCAGGAAGGGCGCTGGGAAACACTGCCATTTCAGCGTGCAATTATGAATGCGATG 712 | || || ||||| || ||| |||| |||| || || || || | || || ||| Sbjct 782 TCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAATG 841 Query 713 GGCAATGACTATATCCGCGAAGTGAATGTCGTTAAATCTGCTCGTGTCGGCTACTCAAAA 772 ||| || ||||| | ||||| || || || || ||||| | || ||| | || Sbjct 842 GGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCAAG 901 Query 773 ATGTTGCTCGGCGTTTACGCATATTTCATCCAGCATAAACAGCGTAACTCCCTAATATGG 832 ||| | |||| | | || || | | | |||| || | || ||| || | | | Sbjct 902 ATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACG---TACTGTCG 958 Query 833 TT---GCCAACCGACGGTGACGCTGAAAACTTCATGAAGTCTCATGTCGAACCGACCATT 889 || ||| ||||| |||||||| || || || |||| || || | | ||| Sbjct 959 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCAATT 1018 Query 890 CGTGATATTCCGACGCTGTTGGCGCTTGCTCCTTGGTACGGCAAAAAACACCGGGACAAT 949 |||||| ||||||||||| || |||||| ||||||| ||| | || ||||| || || Sbjct 1019 CGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAAC 1078 Query 950 ACGCTTAGCAT--GAAGCGTTTCTCAAATGGTCGTGGTTTCTGGTGCCTGGGCGGTAAGG 1007 ||| |||| || |||||| ||||| || || || | | |||||||||| Sbjct 1079 ACG-TTAG-ATCAGAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAAGG 1136 Query 1008 CTGCAAAAAACTACCGTGAAAAATCCGTTGATGTGGCTGGCTACGACGAGCTTGCCGCTT 1067 | || | ||||||||||||| |||| |||||| | | || |||||||| ||||| | Sbjct 1137 CGGCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCAT 1196 Query 1068 TCGATGATGACATCGAGAAAGAAGGTTCTCCCACCTTTCTGGGAGATAAGCGTATTGAGG 1127 ||||| | || || || |||||||| || || ||| ||| || ||||||||| |||| | Sbjct 1197 TCGATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAG 1256 Query 1128 GTTC--TGTATGGCCAAAATCCATTCGCGGCTCTACACCGAAAGTCAAAGGTACGTGCCA 1185 |||| ||| || || || || || || || ||||| ||| | || ||||| Sbjct 1257 GTTCGACGTACGG--TAAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCA 1314 Query 1186 GATAGAAAGGGCTGCTAAGGAGTCAGAACATTTTCTTCGGTTCCATGTTCCATGCCCACA 1245 ||| |||| ||||||| ||||| || | | || | || | || || ||||| || Sbjct 1315 GATTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCA 1374 Query 1246 CTGCGG 1251 |||||| Sbjct 1375 CTGCGG 1380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139871084327488