Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_021190.1 Length=46150 Score E Sequences producing significant alignments: (Bits) Value seq481880 176 1e-39 >seq481880 Length=40534 Score = 176 bits (194), Expect = 1e-39 Identities = 440/664 (66%), Gaps = 6/664 (1%) Strand=Plus/Plus Query 780 GACCTGAGCCGCAAACGGCGGTTGAATGGGCAGACGATAATTACTATCTCCCCAAAGAGT 839 |||| || ||| || | || || ||||| ||||| |||| ||||| | | || | Sbjct 720 GACCGGAACCGAAATCAGCTAGCGAGTGGGCTGACGAGAATTTTTATCTTTCTAGTGAAT 779 Query 840 CGGCCTACCAGGAAGGGCGCTGGGAAACGTTGCCGTTTCAACGCGCGATCATGAATGCGA 899 | | || || ||||| || ||| ||||| ||| || ||| |||||| | || || | Sbjct 780 CTTCATATCACGAAGGTCGTTGGAAAACGCTGCACTTCCAAGTGGCGATCTTAAACGCAA 839 Query 900 TGGGTAACGATTACATACGTGAGGTCAACGTTGTTAAGTCTGCCCGTGTTGGCTATTCAA 959 |||| ||| || || | || ||||| || ||||| || || |||| || | | Sbjct 840 TGGGCTCGGATGCAATCCGAGTTGTGAACGTGGTCAAGTCGGCTCGACTTGGTTACACCA 899 Query 960 AAATGTTGCTGGGTGTTTATGCGTATTTTATTCAGCACAAGCAGCGAAATTCCCTTATCT 1019 | ||| | || | || | |||||| | | ||||||||| || || || || Sbjct 900 AGATGCTCCTCGCTGCTATTGCGTACTACGTAGAGCACAAGCGTCGGAACGTACTG-TCG 958 Query 1020 GGCT-GCCTACTGATGGTGACGCCGAAAACTTTATGAAGTCGCATGTTGAGCCGACGATT 1078 || ||| || ||| ||||| || || ||| || | || ||||| | | ||| Sbjct 959 TTCTCGCCGACCGATACCGACGCTGAGAAGTTTTCAAAAACTCACGTTGATACAGCAATT 1018 Query 1079 CGCGATATTCCGTCACTTCTGGCGCTGGCCCCCTGGTATGGAAAAAAGCACCGGGACAAT 1138 || ||| ||||| | || || ||| ||||| |||| |||| |||||||| || || Sbjct 1019 CGTGATGTTCCGACGCTGAAGGAGCTTGCCCCTTGGTGCGGAATGAAGCACCGAGATAAC 1078 Query 1139 ACGCTCAGTATGAAACGCTTCTCCAACGGTCGCGGGTTCTGGTGTCTGGGTGGTAAAGCG 1198 ||| | | ||| || ||||| ||||| || | | || ||||| ||| Sbjct 1079 ACGTTAGATCAGAAGCGGTTCTCTAACGGCAAGCAATTATTCATACGCGGCGGTAAGGCG 1138 Query 1199 GCGAAAAACTATCGTGAGAAATCGGTCGATGTCGCCGGTTACGATGAACTGGCGGCATTC 1258 || | ||||| ||||| | || | ||||||| || ||| || || || || |||||| Sbjct 1139 GCTAGGAACTACCGTGAAACGTCCGCTGATGTCGTCGTTTATGACGAGCTAGCCGCATTC 1198 Query 1259 GATGAAGATATTGAGAAAGAGGGATCCCCGACGTTCCTGGGTGATAAACGTATTGAGGGG 1318 ||| | |||||||| ||||| ||||| ||||| || |||||||| ||| |||| || Sbjct 1199 GATAAGGATATTGAAAAAGAAGGATCGCCGACCACTCTCGGTGATAAGCGTCTTGAAGGT 1258 Query 1319 TCT--GTCTGGCCCAAATCTATTCGCGGCTCAACGCCAAAAACAAAGGGGACCTGCCAGA 1376 || || || || || || || || ||||| ||||||| || ||||||| Sbjct 1259 TCGACGTACGGT--AAGTCGATACGTGGTTCAACACCAAAAATTCGCGGCGAATGCCAGA 1316 Query 1377 TTGAGCGTGCTGCCAGCGAGTCCGGGCATTTCATGCGTTTTCATGTTGCCTGTCCGCACT 1436 |||| |||||| |||||||||| | | | | | | |||| || | || ||||||| Sbjct 1317 TTGAAAATGCTGCTAGCGAGTCCGAGTACTACTTTAGATTTCGGGTCCCGTGCCCGCACT 1376 Query 1437 GTGG 1440 | || Sbjct 1377 GCGG 1380 Score = 86.0 bits (94), Expect = 2e-12 Identities = 221/330 (67%), Gaps = 19/330 (6%) Strand=Plus/Plus Query 1662 CGCCAGACAGCGTGACGTTTCACATCTGGACGGCATACAGCCCGTTTACCACCTGGGTTC 1721 ||||| ||| | || ||||| | ||||| || || |||||||| || || |||| | Sbjct 1641 CGCCATCAAGCATTACCTTTCAAGTATGGACAGCTTATAGCCCGTTCACTACGTGGGCGC 1700 Query 1722 AGATCGTTAAAGACTGGCTAAAAACGAAAGGGGATACAGGAAAGCGTAAAACCTTCGTGA 1781 ||||||| | || | || |||| || ||| | | ||| || ||||| |||| Sbjct 1701 GGATCGTTGAGGATTTTCTCCGCGCGAAGGGTGATGCCAGCAAGTTAAAGACCTTTGTGA 1760 Query 1782 ACACCACTCTGGGCGAAACATGGGAGCCTAAAATTGGTGAACGGCCTGACGCGGAGC--- 1838 | ||||| || || ||||| |||||| | ||| ||||| ||| ||| ||||| Sbjct 1761 ATACCACCCTTGGTGAAACTTGGGAGGATGAAACGGGTGAGGGGCTTGAGTGGGAGCAGC 1820 Query 1839 TC-ATGGCCGAACGCAAAGAGTTCTTCGGGGCATCCGTACCGGA---GCGTGTTGCTT-A 1893 || || ||| ||| ||| ||||| || | |||||||| | ||| |||| | Sbjct 1821 TCTATAACCGG-CGCGAAG---TCTTCC---CACCGGTACCGGATGAGGTTGTGGCTTTA 1873 Query 1894 TCTGACAGCCGGGATCGACTCCCAACTGGATCGATATGAAATGCGCGTCTGGGGATGGGG 1953 | || | || || || | ||| ||||| |||||| | || ||||| | || Sbjct 1874 TTTGGCGGC----ATAGATACACAAGATGATCGCTATGAAGGCAGGGTTTGGGGGTACGG 1929 Query 1954 GCCCGGTGAGGAAAGCTGGCTGATTGACCG 1983 | ||||| ||||||||||||||||| || Sbjct 1930 GGTTGGTGAAGAAAGCTGGCTGATTGATCG 1959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142290315930752