Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq244905 116 4e-20 seq2812541 93.3 5e-13 seq2642936 89.7 6e-12 seq152609 87.8 2e-11 seq2630953 86.0 7e-11 >seq244905 Length=747 Score = 116 bits (128), Expect = 4e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 869644 CTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGACCTCCTTCAT 869703 |||||||||||||||||| ||||| ||| | |||| | ||| || | ||||| | Sbjct 169 CTCGATGGCGATCTGGAATCCGTAGAAGCAGCGTGCCTCAGGCACCTGTATCTCCTGGCT 110 Query 869704 GAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGAC 869763 |||||| | ||||||||||| |||||||||||||||||||| || || |||| ||| Sbjct 109 GAACCGCTCCACCAGGTTCTCGTTGACGATGCCGTCGCTGGCGGCAAAGAAGGCCAAGAC 50 Query 869764 GTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT 869807 ||| ||| ||||| | ||||||| |||| || |||||| Sbjct 49 GTGGGAGATGAAGTGCCTCTCGTCGGGTTTGAGGGAATCCCAGT 6 >seq2812541 Length=316 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || || ||| || || || || |||||||| | ||| || || || Sbjct 274 GCTTGGCCAACTCTCCAGGCAGGAGGAGACGTACAGCGGTCTGCACCTCACGGCTGGTGA 215 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||| |||| ||||| || ||||| |||| || |||| | Sbjct 214 TGGTGGACTTCTTGTTGTAGTGGGCCAGGCGAGAAGCCTCCCCAGCGATACGCTCGAAGA 155 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| ||| | | | ||||||||| |||||| | Sbjct 154 TGTCGTTGACGAAGCTGTTCATGATGCTCATGGCACGGCTTGAGATGCCCGTGTCGGGAT 95 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| | ||||||||||||| Sbjct 94 GCACCTGCTTCATCACCTTGTAGATG 69 >seq2642936 Length=240 Score = 89.7 bits (98), Expect = 6e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 1628484 GTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAAT 1628543 |||||| ||||| | ||||||||| ||||||||||| ||| ||| | | || | || Sbjct 240 GTCGCGGGCCCGCTGCTCCTCCTTACCGTGGTTCTTCTTGCAGTCCAAGAAATCAAAGAT 181 Query 1628544 GTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 ||| |||||||| |||||||||||| ||||||||| || Sbjct 180 GTCAGCGTGCCAGGGCTCCAGGTAGATGGCAAAGGCACC 142 >seq152609 Length=2568 Score = 87.8 bits (96), Expect = 2e-11 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| || ||||| |||| |||||||||||| |||||||| || | ||||||||||||||| Sbjct 1697 GCCAATTCCGCCAGCCGTCTTGGAGATGAGGGCGCACTGCTTCAACGTGTCGTAGATGCC 1756 Query 1630242 CTCGATCGAGTCGGCCTTCAT 1630262 |||||| |||| | ||||| Sbjct 1757 CTCGATGCTGTCGTCGTTCAT 1777 >seq2630953 Length=237 Score = 86.0 bits (94), Expect = 7e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 1628362 TCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGACGGACAAAAGAGCGAC 1628421 |||||| || | || |||| || || ||| || |||| || || | || || Sbjct 185 TCAAAGTCCTCCCCCCAGCAATCTGACAAGCCCGGGCACTCGTTGGGGCACATCAGGCAC 126 Query 1628422 CAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGTCCACAGTGCGTAAAAG 1628481 ||||| | ||||| || |||| | ||| || ||||| |||| ||| |||||||| Sbjct 125 CAGTCTTCGTCGGTCTCCACGCGCCTCATGAACAGGTCTGGTATCCAGAGTCCGTAAAAG 66 Query 1628482 AGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTG 1628523 ||||| || ||||| | ||||||||| ||||||||||| ||| Sbjct 65 AGGTCCCGGGCCCGCTGCTCCTCCTTACCGTGGTTCTTCTTG 24 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5860415177277186