Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2924339 96.9 3e-15 seq1854222 91.5 1e-13 seq2371163 82.4 7e-11 >seq2924339 Length=450 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| ||||| || || ||||| || || || ||||||| ||||| || Sbjct 213 AAGATCCAGGACAAGGAAGGCATCCCGCCCGACCAGCAGCGGCTGATCTTCGCCGGCAAG 154 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | | | || || || ||||| || ||||| || || || ||| Sbjct 153 CAGCTGGAGGATGGGCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCAC 94 Query 24908 TTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || | |||| || || Sbjct 93 CTGGTGCTGAGGCTGCGGGGCGG 71 >seq1854222 Length=138 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || || || || || || ||| ||||||| || || || Sbjct 7 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCTGGAAAG 66 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||||||| | | | |||| || || ||||| || || || || || || ||| Sbjct 67 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAC 126 Query 24908 TTGGT 24912 ||||| Sbjct 127 TTGGT 131 >seq2371163 Length=190 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || ||||| || || || || || || | | Sbjct 47 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGT 106 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| ||||||||||||||||| || || || || || || Sbjct 107 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 166 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || ||| |||||||||| || || Sbjct 167 CAGCGTCTGATCTTTGCAGGAAA 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433415891713972