Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2812541 129 9e-24 seq188986 111 2e-18 seq2630953 89.7 8e-12 seq175181 87.8 3e-11 seq152609 86.0 1e-10 >seq2812541 Length=316 Score = 129 bits (142), Expect = 9e-24 Identities = 173/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| || || ||| |||||| |||||| || || ||| Sbjct 313 TGTACTTGGTTACGGCCTTGGTGCCTTCGCTGACAGCGTGCTTGGCCAACTCTCCAGGCA 254 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || |||||||| | ||| ||| || ||| ||| |||||| | Sbjct 253 GGAGGAGACGTACAGCGGTCTGCACCTCACGGCTGGTGATGGTGGACTTCTTGTTGTAGT 194 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||||||| ||||| |||| || |||| ||||||||||| || ||||| Sbjct 193 GGGCCAGGCGAGAAGCCTCCCCAGCGATACGCTCGAAGATGTCGTTGACGAAGCTGTTCA 134 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | | | ||||||||| |||||| ||||||||||| | |||||||| Sbjct 133 TGATGCTCATGGCACGGCTTGAGATGCCCGTGTCGGGATGCACCTGCTTCATCACCTTGT 74 Query 1485710 A 1485710 | Sbjct 73 A 73 >seq188986 Length=2302 Score = 111 bits (122), Expect = 2e-18 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| || || |||||||||| | ||||| || ||| ||| Sbjct 967 TGTACTTCGTGACGGCCTTGGTGCCTTCGCTGACGGCGTGCTTTGCCAGCTCACCGGGCA 1026 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 || || || || |||||||| | ||||||| ||| ||| || |||||| || | Sbjct 1027 GGAGGAGACGGACAGCGGTCTGCACCTCGCGGCTGCTGATGGTCGACTTCTTGTT-GTAC 1085 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| || |||||||| ||||||| |||| ||||| || || || |||| Sbjct 1086 TGAGCCAGACGCGAGGCCTCGGCAGCGATGCGCTCGAAGATGTCATTAACGAAGCTGTTC 1145 Query 1485649 ATGAT 1485653 ||||| Sbjct 1146 ATGAT 1150 >seq2630953 Length=237 Score = 89.7 bits (98), Expect = 8e-12 Identities = 101/134 (75%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 2071801 AGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGC 2071860 || |||||| | ||| ||||| | || ||||||| || | ||| ||||||| | | Sbjct 157 AGCCCGGGCAC-TCGTTGGGGCACATCAGGCACCAGTCTTCGTCGGTCTCCACGCGCCTC 99 Query 2071861 ATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTG 2071920 || |||||||| |||| || ||||||||||| || || ||||| | ||||||||| Sbjct 98 ATGAACAGGTCTGGTATCCAGAGTCCGTAAAAGAGGTCCCGGGCCCGCTGCTCCTCCTTA 39 Query 2071921 CCGTGGTTCTTTTT 2071934 ||||||||||| || Sbjct 38 CCGTGGTTCTTCTT 25 >seq175181 Length=1330 Score = 87.8 bits (96), Expect = 3e-11 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| || || |||||||||| ||||||| || ||| ||| Sbjct 929 TGTACTTGGTGACGGCCTTGGTGCCTTCGCTGACGGCGTGCTTGGCCAGCTCTCCGGGCA 870 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGT 1485572 || || || || |||||||| | ||| ||| || ||| || Sbjct 869 GGAGGAGACGGACAGCGGTCTGCACCTCACGGCTGGTGATGGT 827 >seq152609 Length=2568 Score = 86.0 bits (94), Expect = 1e-10 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 2073628 CCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGC 2073687 |||| | | || | ||||||| | | ||| || ||||| |||| |||||||||||| Sbjct 1668 CCCGTGCCACGGATCTTGTGCACATTGACGCCAATTCCGCCAGCCGTCTTGGAGATGAGG 1727 Query 2073688 GCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGGCCTTCAT 2073737 ||||||| |||| ||| ||||||||||||||||| |||| | ||||| Sbjct 1728 GCGCACTGCTTCAACGTGTCGTAGATGCCCTCGATGCTGTCGTCGTTCAT 1777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7596435750085062