Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq1302876 89.7 6e-13 seq769647 89.7 6e-13 seq3005103 86.0 8e-12 seq1545705 86.0 8e-12 seq1410984 86.0 8e-12 seq467002 86.0 8e-12 seq371995 86.0 8e-12 seq206806 86.0 8e-12 seq1627265 84.2 3e-11 seq69505 84.2 3e-11 seq2706342 82.4 1e-10 >seq1302876 Length=127 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||| |||||||||||| ||||| | | ||||||| | ||||||||||||||| Sbjct 104 CCAATCCTCGGTAGTATAGTGGTGAGTATCTCTGACTGTCGCTCAGGAGACCGGGGTTCG 45 Query 11785 ATTCCCCGACGAGGAG 11800 |||||||| ||||||| Sbjct 44 ATTCCCCGCCGAGGAG 29 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||| ||||| | | ||||||| | ||||||||||||||||||| Sbjct 100 TCCTCGGTAGTATAGTGGTGAGTATCTCTGACTGTCGCTCAGGAGACCGGGGTTCGATTC 41 Query 8718 CCCGACGAGGAG 8729 |||| ||||||| Sbjct 40 CCCGCCGAGGAG 29 Score = 84.2 bits (92), Expect = 3e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 ||||||| |||||| |||||||||||||||| | |||||| | | |||| | ||||||| Sbjct 29 CTCCTCGGCGGGGAATCGAACCCCGGTCTCCTGAGCGACAGTCAGAGATACTCACCACTA 88 Query 139413 TACTAACGAGGATT 139426 ||||| |||||||| Sbjct 89 TACTACCGAGGATT 102 >seq769647 Length=110 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| ||||||||||||||||||| | | ||||| | | ||||||||||||||||||| Sbjct 89 TCCTCGGTAGTATAGTGGTTAGTATTTCTGACTGTCACTCAGGAGACCGGGGTTCGATTC 30 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 29 CCCGCCGGGGAG 18 >seq3005103 Length=1995 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| | | ||||| ||| ||||||||||||| ||||| Sbjct 51 TCCTCGGTAGTATAGTGGTTAGTATCTCTGACTGTCACACAGGAGACCGGGGTTAGATTC 110 Query 8718 CCCGACGAGGAG 8729 |||| || |||| Sbjct 111 CCCGCCGGGGAG 122 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 11720 TGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGG 11778 ||||||| | |||||| |||||||||||| ||||| | | ||||| ||| ||||||||| Sbjct 42 TGTAACCAA-TCCTCGGTAGTATAGTGGTTAGTATCTCTGACTGTCACACAGGAGACCGG 100 Query 11779 GGTTCGATTCCCCGACGAGGAG 11800 |||| ||||||||| || |||| Sbjct 101 GGTTAGATTCCCCGCCGGGGAG 122 >seq1545705 Length=127 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| ||||||| |||| ||||| | | ||||| ||| ||||||||||||||||||| Sbjct 26 TCCTCGGTAGTATAATGGTGAGTATCTCTGACTGTCACACAGGAGACCGGGGTTCGATTC 85 Query 8718 CCCGACGAGGAG 8729 |||| ||||||| Sbjct 86 CCCGCCGAGGAG 97 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 ||| |||||| ||||||| |||| ||||| | | ||||| ||| ||||||||||||||| Sbjct 22 CCAATCCTCGGTAGTATAATGGTGAGTATCTCTGACTGTCACACAGGAGACCGGGGTTCG 81 Query 11785 ATTCCCCGACGAGGAG 11800 |||||||| ||||||| Sbjct 82 ATTCCCCGCCGAGGAG 97 >seq1410984 Length=127 Score = 86.0 bits (94), Expect = 8e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409 || ||||||| |||||| |||||||||||||||| | | ||||| | | |||| | |||| Sbjct 21 CATCTCCTCGGCGGGGAATCGAACCCCGGTCTCCTGAGTGACAATCAGAGATACTCACCA 80 Query 139410 CTATACTAACGAGGATT 139426 |||||||| |||||||| Sbjct 81 CTATACTACCGAGGATT 97 >seq467002 Length=2166 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| | | ||||| | | ||||||||||||||||||| Sbjct 2097 TCCTCGATAGTATAGTGGTTAGTATCTCTGACTGTCACTCAGGAGACCGGGGTTCGATTC 2156 Query 8718 CCCGACGAGG 8727 |||| ||||| Sbjct 2157 CCCGCCGAGG 2166 >seq371995 Length=679 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||| ||||||||||||| | | ||||| | ||||||||||||||||||| Sbjct 128 TCCTCGGTAGTGTAGTGGTTAGTATCTCTGACTGTCACTTAGGAGACCGGGGTTCGATTC 69 Query 8718 CCCGACGAGGAG 8729 |||||||||||| Sbjct 68 CCCGACGAGGAG 57 >seq206806 Length=1019 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| |||||||||||||||||| | | ||||| | | ||| ||||||||||||||| Sbjct 995 TCCTCGGTAGTATAGTGGTTAGTATCTCTGACTGTCACTCAGGAAACCGGGGTTCGATTC 936 Query 8718 CCCGACGAGGAG 8729 |||| ||||||| Sbjct 935 CCCGCCGAGGAG 924 Score = 82.4 bits (90), Expect = 1e-10 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 ||||||||| |||||||||||| ||||| | | ||||| | | ||| |||||||||||| Sbjct 998 CAGTCCTCGGTAGTATAGTGGTTAGTATCTCTGACTGTCACTCAGGAAACCGGGGTTCGA 939 Query 11786 TTCCCCGACGAGGAG 11800 ||||||| ||||||| Sbjct 938 TTCCCCGCCGAGGAG 924 >seq1627265 Length=127 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||| ||||||||||||||||| | | ||||| | | ||||||||||||||||||| Sbjct 71 TCCTCGGAAGTATAGTGGTTAGTATCTCTGACTGTCACTCAGGAGACCGGGGTTCGATTC 12 Query 8718 CCCGACGAGGA 8728 |||| |||||| Sbjct 11 CCCGCCGAGGA 1 >seq69505 Length=3105 Score = 84.2 bits (92), Expect = 3e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 8659 CCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTCC 8718 ||||| |||||||||||| ||||| | | ||||| | | |||||||||||||||||||| Sbjct 159 CCTCGGTAGTATAGTGGTGAGTATCTCTGACTGTCACTCAGGAGACCGGGGTTCGATTCC 100 Query 8719 CCGACGAGGAG 8729 ||| ||||||| Sbjct 99 CCGTCGAGGAG 89 >seq2706342 Length=261 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || |||||| ||||||| |||| ||||| | | ||||| | | |||||||||||||||| Sbjct 81 TAATCCTCGGTAGTATATTGGTGAGTATCTCTGACTGTCACTCAGGAGACCGGGGTTCGA 22 Query 8715 TTCCCCGACGAGGAG 8729 ||||||| ||||||| Sbjct 21 TTCCCCGCCGAGGAG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628310419103520