Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2924339 118 1e-21 seq2830548 107 2e-18 seq103958 102 8e-17 seq2371163 89.7 5e-13 seq1854222 89.7 5e-13 >seq2924339 Length=450 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| | ||||| ||||||||||| Sbjct 100 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCCTCCAGCTGCTTGCC 159 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || ||||||||||||||||| ||||||||||||||||| |||||| ||| Sbjct 160 GGCGAAGATCAGCCGCTGCTGGTCGGGCGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 219 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCAC 133612 || | ||| | |||||| ||||||| || Sbjct 220 GACATTCTCGATGGTGTCGCTGGGCTCAAC 249 >seq2830548 Length=329 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 148865 GTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATT 148924 |||||| | |||||||| ||||| || ||||| ||||| ||||| ||||| ||| || Sbjct 186 GTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 127 Query 148925 GCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 |||||||||||||| || |||||||||||||||||||| Sbjct 126 ACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGG 88 >seq103958 Length=1487 Score = 102 bits (112), Expect = 8e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| |||||| | |||||| | ||||| | |||||| || ||||| ||||| ||| Sbjct 684 CTCGTCCGGGCTGGAGTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCC 625 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGG 148963 || ||||| ||| || ||||| |||||||| || |||||||||||||||||||| Sbjct 624 CAGGTTCTGTTGGTTACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGG 571 >seq2371163 Length=190 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || || ||||||||||| || |||||||| || ||||| |||||| Sbjct 190 CTTTCCTGCAAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGATCTT 131 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 |||| | ||| | ||||| | ||||| || || | |||| ||||||||| || Sbjct 130 GGCTTTGACATTCTCGATGGTGTCACTTGGCTCGACCTCAAGAGTGATGGTTTTGCCTGT 71 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| |||||||| Sbjct 70 GAGGGTTTTGACGAAGATCTGCAT 47 >seq1854222 Length=138 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| ||| || ||| | | | ||||| || Sbjct 128 AAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCCTCCAG 70 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | || || ||||||||||| || |||||||| || ||||| ||| Sbjct 69 CTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCCCTCTTTGTCTTGGAT 10 Query 133574 CTT 133576 ||| Sbjct 9 CTT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465253495855920