Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq572346 87.8 4e-12 seq1854222 84.2 5e-11 seq831657 84.2 5e-11 seq500828 84.2 5e-11 >seq572346 Length=102 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 || || |||||||||||||||| || ||||||| | ||| | ||||||||||||||| Sbjct 1 TGGAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 60 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| || || || || Sbjct 61 TTTCCGGCGAAGATCAGACGCTGCTG 86 >seq1854222 Length=138 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| ||||| ||||| || || || ||| || | || |||||||| |||||| Sbjct 7 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCTGGAAAG 66 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||| ||||| | || || |||| |||||| ||||||||||||| || || ||| Sbjct 67 CAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACCCTCCAC 126 Query 206374 CTTGTT 206379 | ||| Sbjct 127 TTGGTT 132 >seq831657 Length=112 Score = 84.2 bits (92), Expect = 5e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 204770 TGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 204829 || || |||||||||||||||| || ||||||| | ||| | |||||||| |||||| Sbjct 11 TGGAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGC 70 Query 204830 TTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||| || || || || Sbjct 71 TTTCCGGCGAAGATCAGACGCTGCTG 96 >seq500828 Length=100 Score = 84.2 bits (92), Expect = 5e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| | ||| || |||||||||||||||| || ||||||| || || | |||||||| Sbjct 22 AACCAAGTGGAGGGTAGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTC 81 Query 204823 CAGCTGCTTTCCGGCGAAG 204841 ||||||||||||||||||| Sbjct 82 CAGCTGCTTTCCGGCGAAG 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1136296775453818