Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq244905 105 9e-17 seq2812541 100 4e-15 seq1153379 89.7 7e-12 >seq244905 Length=747 Score = 105 bits (116), Expect = 9e-17 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 ||||||| | || |||||| |||||| | ||||| ||| ||||||||||| ||||||| Sbjct 25 CGACGAGAGGCACTTCATCTCCCACGTCTTGGCCTTCTTT-GCCGCCAGCGACGGCATCG 83 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGT 1455991 | ||||||||||| | || || | | ||| | || |||| |||||||| | | Sbjct 84 TCAACGAGAACCTGGTGGAGCGGTTCAGCCAGGAGATACAGGTGCCTGAGGCACGCTGCT 143 Query 1455992 TTTACGGGTTCCAGATCGCCATCGA 1456016 | ||||| ||||||||||||||||| Sbjct 144 TCTACGGATTCCAGATCGCCATCGA 168 >seq2812541 Length=316 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||||||||| ||| || || |||| || | | || Sbjct 70 ATCTACAAGGTGATGAAGCAGGTGCATCCCGACAC-----GGGCATC-TCAAGCCGTGCC 123 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||||||| |||| || |||| ||||| | Sbjct 124 ATGAGCATCATGAACAGCTTCGTCAACGACATCTTCGAGCGTATCGCTGGGGAGGCTTCT 183 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||| ||| ||| || || ||| | |||||||| || Sbjct 184 CGCCTGGCCCACTACAACAAGAAGTCCACCATCACCAGCCGTGAGGTGCAGACCGCTGTA 243 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || || ||| || || |||||| |||||| ||| ||| ||||||| Sbjct 244 CGTCTCCTCCTGCCTGGAGAGTTGGCCAAGCACGCTGTCAGCGAAGGCACCA 295 >seq1153379 Length=123 Score = 89.7 bits (98), Expect = 7e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 |||| |||||||| | || ||||| ||||||||||||||||| ||||||||||| || | Sbjct 104 TGCCTGAGGCACGCTGCTTCTACGGATTCCAGATCGCCATCGAGAACATCCACTCGGAGA 45 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 ||| | ||||| ||||||||| |||| ||||| Sbjct 44 TGTACAGCTTGCTGATTGACACCTACATCAAAGACCC 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6887832800030196