Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq103958 104 3e-17 seq2830548 96.9 4e-15 seq315344 93.3 5e-14 seq2172454 87.8 2e-12 >seq103958 Length=1487 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||| ||||| |||||||||| ||| | ||| |||||||||| ||||| ||| || Sbjct 669 GTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 610 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||| |||| || ||||||||||| |||||||| || || || |||||||| |||| Sbjct 609 ACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGGC 550 Query 118874 CT 118875 || Sbjct 549 CT 548 >seq2830548 Length=329 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 118754 GTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATT 118813 |||||| || || || || |||| ||| | ||| |||||||||| ||||| ||| || Sbjct 186 GTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTT 127 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGA 118873 ||| |||| || ||||||||||| |||||||| || || || |||||||| |||| Sbjct 126 ACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGGC 67 Query 118874 CTTGAGAATAGCCTTCCAGACAT 118896 || | || |||| ||||| || Sbjct 66 CTGCACGATGGCCTGCCAGAGAT 44 >seq315344 Length=497 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||||| ||||||| | |||| || || |||| ||| || ||||||||| Sbjct 312 TAGATGTTACTTGTGTAGGGCTCAATGGACTCGTTATTGCCCAGGATCTGAGCTGTGGAG 371 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || ||||||||||| |||| || || ||||| | ||| || | | |||| || Sbjct 372 GCAGTGGGCATGGGGGCCAGCAGGAGACTGTTCCTGAGCCCGTACTTGGCAATGTCAGCC 431 Query 118302 TTGAGAGCGTCCCAGTCGT 118320 ||||| ||| ||||||||| Sbjct 432 TTGAGGGCGGCCCAGTCGT 450 >seq2172454 Length=167 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| || | ||||| ||||||| | |||| || || |||| ||| |||||||||||| Sbjct 46 TAGATGTTACTGGTGTAGGGCTCAATGGACTCGTTATTGCCCAGGATCTGGGCTGTGGAG 105 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACC 118282 || ||||||||||| |||| || || ||||| | ||| || Sbjct 106 GCAGTGGGCATGGGGGCCAGCAGGAGACTGTTCCTGAGCCC 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595193956818480