Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2213560 89.7 1e-12 seq1574934 89.7 1e-12 seq1184254 89.7 1e-12 seq108421 89.7 1e-12 seq103658 89.7 1e-12 seq2195827 87.8 5e-12 seq2130746 86.0 2e-11 seq1633724 86.0 2e-11 seq1309681 86.0 2e-11 seq831657 86.0 2e-11 seq475223 86.0 2e-11 seq209647 84.2 6e-11 >seq2213560 Length=171 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 235873 GATGTCGTTCAATATA-GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGA 235931 ||| ||| | | |||| ||||||| ||| |||||||||||| |||||||||||||||| | Sbjct 51 GATCTCGATAATTATATGGGGGAT-TAGCTCAATTGGTAGAGCGCTCGCTTTGCATGCAA 109 Query 235932 GAGGTACCGGGATCAAAACCC 235952 |||||||||||||| | |||| Sbjct 110 GAGGTACCGGGATCGATACCC 130 >seq1574934 Length=127 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || ||||||||||| ||||| || || || Sbjct 16 CATACCACCACGCAGACGGAGAACCAAGTGGAGGGTAGACTCTTTCTGAATGTTGTAGTC 75 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGC 140618 ||| | || || |||||||| || || ||||| |||||||| ||||| ||| Sbjct 76 AGACAGAGTGCGGCCATCTTCCAGCTGCTTTCCTGCAAAGATCAGACGCTGC 127 >seq1184254 Length=124 Score = 89.7 bits (98), Expect = 1e-12 Identities = 59/64 (92%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 75 GGGGGAT-TAGCTCAATTGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACCGGGATCGAT 17 Query 235949 ACCC 235952 |||| Sbjct 16 ACCC 13 >seq108421 Length=2328 Score = 89.7 bits (98), Expect = 1e-12 Identities = 68/77 (88%), Gaps = 4/77 (5%) Strand=Plus/Plus Query 235877 TCGTT--CAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAG 235934 ||||| |||| ||||||||| ||| |||| ||||||| ||||||||||||||||||||| Sbjct 68 TCGTTAGCAAT-TAGGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAG 125 Query 235935 GTACCGGGATCAAAACC 235951 ||||||||||| | ||| Sbjct 126 GTACCGGGATCGATACC 142 >seq103658 Length=1144 Score = 89.7 bits (98), Expect = 1e-12 Identities = 68/79 (86%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 235884 ATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGA 235943 ||| |||||||| ||| |||| ||||||| ||||||||| ||||| |||||||||||||| Sbjct 637 ATACAGGGGGAT-TAGCTCAAGTGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACCGGGA 695 Query 235944 TCAAAACCCAGCATCTCCA 235962 |||| |||| | |||||| Sbjct 696 TCAATACCCGGATTCTCCA 714 >seq2195827 Length=169 Score = 87.8 bits (96), Expect = 5e-12 Identities = 77/90 (86%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 235877 TCGTT--CAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAG 235934 ||||| |||| ||||||||| ||| |||| ||||||| | ||||||||||||||||||| Sbjct 68 TCGTTAGCAAT-TAGGGGGAT-TAGCTCAAATGGTAGAGCACTCGCTTTGCATGCGAGAG 125 Query 235935 GTACCGGGATCAAAACCCAGCATC-TCCAT 235963 ||||||||||| | |||| | ||| ||||| Sbjct 126 GTACCGGGATCGATACCC-GGATCTTCCAT 154 >seq2130746 Length=163 Score = 86.0 bits (94), Expect = 2e-11 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 235888 AGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAA 235947 |||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 101 AGGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACCGGGATCGA 159 Query 235948 AACC 235951 ||| Sbjct 160 TACC 163 >seq1633724 Length=127 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 235873 GATGTCGTTCAATATA-GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGA 235931 ||| ||| | ||| || ||||||| ||| |||| ||||||| |||||||||||||||||| Sbjct 75 GATCTCGATAAATGTATGGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGA 17 Query 235932 GAGGTACCGGGATC 235945 |||||||||||||| Sbjct 16 GAGGTACCGGGATC 3 >seq1309681 Length=127 Score = 86.0 bits (94), Expect = 2e-11 Identities = 58/64 (91%), Gaps = 1/64 (2%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 41 GGGGGAT-TAGCTCAAATGGTAGAACGCTCGCTTTGCATGCGAGAGGTACCGGGATCGAT 99 Query 235949 ACCC 235952 |||| Sbjct 100 ACCC 103 >seq831657 Length=112 Score = 86.0 bits (94), Expect = 2e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||||| | ||| || ||||||||||| || || || || ||||| | || || |||||| Sbjct 2 AGAACCAAATGGAGGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 61 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCC 140635 ||||| || ||||| || ||||| ||||| ||||| || || || || || Sbjct 62 TCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGGATGCC 111 >seq475223 Length=1295 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 1138 GGGGGAT-TAGGTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACCGGGATCGAT 1196 Query 235949 ACCCAGCATCTCCA 235962 |||| | |||| || Sbjct 1197 ACCC-GGATCTTCA 1209 >seq209647 Length=309 Score = 84.2 bits (92), Expect = 6e-11 Identities = 57/63 (90%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 235889 GGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAA 235948 ||||||| ||| |||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 248 GGGGGAT-TAGCTCAAATGGTAGAGCGCTCGCTTTGCATGCGAGAGGTACCGGGATCGAT 306 Query 235949 ACC 235951 ||| Sbjct 307 ACC 309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1456886432115774