Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq103958 102 9e-17 seq2830548 96.9 4e-15 seq2630953 95.1 1e-14 seq2506243 87.8 2e-12 seq348554 84.2 2e-11 seq152609 84.2 2e-11 seq145059 84.2 2e-11 >seq103958 Length=1487 Score = 102 bits (112), Expect = 9e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 |||||||||||| || |||||| || || ||||||| ||| ||||||||||||| Sbjct 684 CTCGTCCGGGCTGGAGTACTCGATAATCTCCGTGCACAGGTTACTGCACTTGATGGTGCC 625 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||| ||||| ||| ||||| |||||||| ||||||||| || || Sbjct 624 CAGGTTCTGTTGGTTACTCTTACTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACC 565 Query 79200 GGTCTC 79205 |||||| Sbjct 564 GGTCTC 559 >seq2830548 Length=329 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 |||||||||||| || ||| ||||| || || |||| ||| ||||||||||||| Sbjct 201 CTCGTCCGGGCTCGAGTACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCC 142 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 | ||||| ||||| ||||| ||| ||||| |||||||| ||||||||| || || Sbjct 141 CAGGTTCTGTTGGTTACTCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACC 82 Query 79200 GGTCTC 79205 |||||| Sbjct 81 GGTCTC 76 >seq2630953 Length=237 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 79288 TACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCAC 79347 |||| || || || ||||||| || ||| | || |||||||||||||| |||||| Sbjct 194 TACAGCTTGTCAAAGTCCTCCCCCCAGCAATCTGACAAGCCCGGGCACTCGTTGGGGCAC 135 Query 79348 ATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGG 79407 |||||| |||||| ||||| |||| || | |||||| ||||| || ||||| | | Sbjct 134 ATCAGGCACCAGTCTTCGTCGGTCTCCACGCGCCTCATGAACAGGTCTGGTATCCAGA-G 76 Query 79408 GCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTC 79452 |||| |||||||| ||| ||| |||||| | || |||||| Sbjct 75 TCCGTAAAAGAGGTCCCGGGCCCGCTGCTCCTCCTTACCGTGGTTC 30 >seq2506243 Length=210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 78226 TTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCC-ATGAAGAT 78284 |||||| ||| | ||||||||| | || |||| | | | | ||| || | ||| || Sbjct 182 TTCCATGCGTGGAAGTGCATACTGGTCAACTTGCCGA-AGTTGGGCGCTGCGATGTGAAT 124 Query 78285 GTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGA 78344 |||||| |||||| |||||||||||| ||||||||||| |||||||| | || | Sbjct 123 GTTGAGGGACTGGCTCTGGTCGATGTAGGCACCGCGGTCTGCCGCCATCTTGAGAATGTT 64 Query 78345 CTTTTGCGGAATCTCCCAGATGGTC 78369 |||||| | ||||||||| | ||| Sbjct 63 CTTTTGGGAGATCTCCCAGGTTGTC 39 >seq348554 Length=3857 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 20090 CGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGC 20149 || ||||| || || | |||||||| |||||||||||||||| |||||| | | | ||| Sbjct 3311 CGTCACCGACCCATTGGCATCGGCGTGCAGGGCCTGGCCGACGCTTTCATCAAGATGGGC 3252 Query 20150 CTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTAC 20209 || | || || ||| |||| | |||| |||| ||||| ||| || | ||| Sbjct 3251 TTCCCCTTTGAGAGCCCCGAGGCCCAGAAGCTGAACATCCAGATCTTTGAGACCATCTAC 3192 Query 20210 CACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGACGGCCCGTACGAGAC 20265 |||| || |||| | | ||||| |||||||| ||| || | |||||||| Sbjct 3191 TACGCCGCTCTCCGAGCAAGCTGCGATCTCGCCAAGGAGTTAGGAACCTACGAGAC 3136 >seq152609 Length=2568 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 19250 TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTC 19309 || ||||||||||| | | ||||| || |||||||| |||||||||||||| ||| | Sbjct 1798 TCCAGCTGTTTCCTGTTAACGATGAACGACGACAGCATCGAGGGCATCTACGACACGTTG 1739 Query 19310 AAGGAGTGCGCGCACATCTCCAAG 19333 ||| ||||||| | |||||||||| Sbjct 1738 AAGCAGTGCGCCCTCATCTCCAAG 1715 >seq145059 Length=6353 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 19250 TCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTC 19309 || |||||||| || | | |||| || ||||||||||||||||||||||| ||| | Sbjct 2142 TCCAGCTGTTTTCTGTTAACGATGAGTGACGACAGCATTGAGGGCATCTACGACACGTTG 2083 Query 19310 AAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG 19350 ||| ||||||| | |||||||||| | | || || ||||| Sbjct 2082 AAGCAGTGCGCCCTCATCTCCAAGACGGCTGGCGGAATCGG 2042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 527910840335520