Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq274894 89.7 5e-13 seq2630953 82.4 8e-11 >seq274894 Length=2169 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| || || || || || ||||| ||||||||| |||||||| Sbjct 1263 GTGAAGATGTAACGGGGACTAGCAGCGTCTTTCCCACCGTACAGCCGCGTACCAAACTGA 1204 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||| || | ||||||| ||||||| | ||||| ||||| || | Sbjct 1203 CCAATGGGCTGCAAGAGATTCAAGTTGTTGCTGCCCACGTAGTTCTGCGCCAAGTTGATG 1144 Query 152149 ATCGTGC 152155 || |||| Sbjct 1143 ATAGTGC 1137 >seq2630953 Length=237 Score = 82.4 bits (90), Expect = 8e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Plus Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGA 53688 ||| || ||| | || ||| ||| ||| ||||| ||| | || ||||| || || Sbjct 30 GAACCACGGTAAGGAGGAGCAGCGGGCCCGGGACCTCTTTTACGGACTCTGGATACCAGA 89 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||| |||||| ||||||| ||||| || |||| |||||||||||| |||||||| Sbjct 90 CCTGTTCATGAGGCGCGTGGAGACCGACGAAGACTGGTGCCTGATGTGCCCCAACGAGTG 149 Query 53749 CCCCGGCCT-CCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTAT 53794 ||| ||| | ||| || || || ||||| ||| || || ||||| Sbjct 150 CCCGGGCTTGTCAGATTG-CTGGGGGGAGGACTTTGACAAGCTGTAT 195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526651225988400