Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2371163 116 4e-21 seq1193320 116 4e-21 seq1193319 113 5e-20 seq2924339 105 7e-18 seq1097346 104 3e-17 seq1854222 100 3e-16 seq1834676 100 3e-16 seq129324 96.9 4e-15 seq2830548 95.1 1e-14 seq1385232 87.8 2e-12 seq823516 87.8 2e-12 >seq2371163 Length=190 Score = 116 bits (128), Expect = 4e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || ||||| || || ||||||||||| ||| || || Sbjct 47 ATGCAGATCTTCGTCAAAACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGT 106 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | || || || || || ||||| ||||| || || ||||||||| Sbjct 107 GACACCATCGAGAATGTCAAAGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 166 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 |||||||| || ||||| || ||| Sbjct 167 CAGCGTCTGATCTTTGCAGGAAAG 190 >seq1193320 Length=124 Score = 116 bits (128), Expect = 4e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| |||||||| || || ||||| || || ||||||||||| ||| || |||| | | Sbjct 123 ATCTTCGTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGTGACACC 64 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||||| || || |||||||| ||||| || || ||||||||||||||| Sbjct 63 ATTGAGAATGTAAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGT 4 Query 27532 CT 27533 || Sbjct 3 CT 2 >seq1193319 Length=124 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 ||||| |||||||| || || ||||| || || ||||||||||| ||| || |||| | Sbjct 123 ATCTTCGTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGTGACACA 64 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||||| || || |||||||| ||||| || || ||||||||||||||| Sbjct 63 ATTGAGAATGTAAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGT 4 Query 27532 CT 27533 || Sbjct 3 CT 2 >seq2924339 Length=450 Score = 105 bits (116), Expect = 7e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 |||||||| | | || | ||| | ||| | ||||| || || ||||||||||| || | Sbjct 251 AGGTTGAGCCCAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCA 192 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || || ||||||||||| || || || || || ||||| || ||||||| || |||| Sbjct 191 TCCCGCCCGACCAGCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACCC 132 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | | ||||| || |||| ||||| ||||| || || || || || | || || || | Sbjct 131 TCTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGAGGCTGCGGGGCG 72 Query 27632 G 27632 | Sbjct 71 G 71 >seq1097346 Length=122 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || ||||| || || ||||||||||| ||| || |||| | ||| | Sbjct 122 GTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGTGACACCATCGAG 63 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || || ||||| ||||| || || ||||||||||||||||| || Sbjct 62 AATGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATC 3 Query 27538 TT 27539 || Sbjct 2 TT 1 >seq1854222 Length=138 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543 ||||| || || || ||||| ||||| || || ||||||||||||||||| || || ||| Sbjct 1 AAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTCGCT 60 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||||| || ||||| | ||||| || |||| || || ||||| Sbjct 61 GGAAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAGAGTCCACC 120 Query 27604 CTTCA 27608 || || Sbjct 121 CTCCA 125 >seq1834676 Length=136 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || ||||||||||||||| || | Sbjct 123 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAAACCATCACTCTTGAGGTTGAGCCAAGC 64 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 63 GACACAATCGAGAATGTAAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 4 Query 27526 CAG 27528 ||| Sbjct 3 CAG 1 >seq129324 Length=390 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||| || || || |||||||| ||| || || Sbjct 23 ATGCAGATCTTCGTCAAGACCCTCACAGGCAAAACCATCACACTTGAGGTCGAGCCAAGT 82 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || || || ||||| ||||| || || ||||||||| Sbjct 83 GACACAATCGAGAATGTAAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAG 142 Query 27526 CAG 27528 ||| Sbjct 143 CAG 145 >seq2830548 Length=329 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| | ||| || || |||| ||| |||| || || |||||||| | ||||| Sbjct 184 ACTCAATGATCTCGGTACACAGGTTACTGCACTTGATGGTGCCCAGGTTCTGTTGGTTAC 125 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 |||| |||||| || |||||||| ||||||||||||||||||||| ||| | || Sbjct 124 TCTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTACCGGTCTCCGTCTGGGCCT 65 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | |||||| | ||| | | | ||||||| | |||||||||||| || || Sbjct 64 GCACGATGGCCTGCCAGAGATACTGGGCCTTGATCTTCTTGCGGAATTTCCCCTC 10 >seq1385232 Length=127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 27505 GAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGAT 27564 ||||| || || ||||||||||||||||| || ||||| || ||||| || || |||| Sbjct 126 GAGGGCATCCCACCAGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGC 67 Query 27565 CGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTT 27624 |||||||| | ||||| || |||| || || ||||| || || | || | ||||| Sbjct 66 CGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTCCACTTGGTTCTCCGTCTG 7 Query 27625 CGCGGT 27630 || ||| Sbjct 6 CGTGGT 1 >seq823516 Length=112 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 27423 GACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTT 27482 ||| || || ||||| || || ||||||||||| ||| || |||| | || | || | Sbjct 112 GACCCTCACAGGCAAAACCATCACTCTTGAGGTCGAGCCAAGTGACACAATCGAGAACGT 53 Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 ||||| || || |||||||| ||||| || || ||||||||||||||||| Sbjct 52 CAAGGCCAAGATCCAGGACAAAGAGGGCATCCCACCAGACCAGCAGCGTCT 2 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548877721692960