Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq3002080 529 6e-146 >seq3002080 Length=1320 Score = 529 bits (586), Expect = 6e-146 Identities = 848/1199 (71%), Gaps = 23/1199 (2%) Strand=Plus/Minus Query 38598 ATTTGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCG-TGTCTGTCA 38656 |||||||| || ||| || | |||||||||| |||||||| |||| | |||||| || Sbjct 1196 ATTTGTAGTAGCTCAGACTTGATCTGACAGTTACCCGTTTT---TTACTGGTGTCTGCCA 1140 Query 38657 GATTA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGC 38715 | ||| || |||||| |||||||| || |||| ||| ||| ||||||||||| ||||| Sbjct 1139 GTTTAGATCTGAGCT-AAATTCTTCTCAGCCCAGATCGTTTTACCATCAAGTAAAGTTGC 1081 Query 38716 CATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACAT 38775 ||| || |||||||| |||||||| || || ||||| ||||| | | || ||||| | Sbjct 1080 CATTGGCGTTCTGCCGCAGCACATCTTGCCCTGATGAGTTCGCTCATTGTTGTAATATTT 1021 Query 38776 TAACCACTCATCTAAATCCGCTTGTAATGTCGTTAA-ATCCGTATAAATTTTCTTCCTAA 38834 | ||| || || | ||| ||||| ||||||| ||| | ||| | |||||| | | Sbjct 1020 AATCCATTCGTCCAGATCTTTTTGTAGC-TCGTTAATATCGGCATACAGTTTCTTGCGGA 962 Query 38835 ATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATACCATTCG 38894 | | | || || || ||||||| || || || ||||| || |||||||| ||||| | Sbjct 961 AGGTGATCTGATAGAACTCTTGTAGAATGGTCTTGTGGAAGCGCTCGCAGATCCCATTGG 902 Query 38895 TCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAAATAAAGCT 38954 | || |||||| | ||||||| |||||||| || |||||||| ||||| ||||| |||| Sbjct 901 TTTGCGGATGCATTGCTTTCGTCTTCGTATGATCAATGTCATTGATCGCCAAATACAGCT 842 Query 38955 CATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTA 39014 |||||| || | || || |||||||| || |||| || || || ||||| || | Sbjct 841 GATAATCATGCTGCTCAACACGACCACAATACTCCGTTCCACGATCCGTCAATATCCGCA 782 Query 39015 ACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAG 39074 |||||||||| | || || ||| | ||||| ||| || || || || || | Sbjct 781 ACATCGGTAATTCATGTTGCTCGAAGAACGGTAATACTCGGTCGTTGAGGGCGTCGGCTG 722 Query 39075 CACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAA 39134 | | || | |||||| | || || | ||| || || ||||| ||||| || || | Sbjct 721 CCGTTATTGGTGTCTTCGTCGTGTACAATTTACAGAAGGCGACTTTGCTGTAGGTGTCGA 662 Query 39135 TAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTT 39194 ||| || || || ||||| ||||| || || ||||| |||||||| ||||| || |||| Sbjct 661 CAAATGTCTGCTGGTAAATCCGACCAACACCCTTGAGATTGCCCACGTAGAAGGTGTCTT 602 Query 39195 GTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACAGGCAATCTCATCTTCTT 39254 | ||||||||||| || || || ||||||||||| || || || ||||| | || Sbjct 601 GAGAGCCAAGATAACCGGGATGATGGGTTTCAATTTCCCCGCATGCTTCGTCATCATGTT 542 Query 39255 TCTTACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCA 39314 |||| || | |||| ||||| | ||||| || || || || | || || Sbjct 541 TCTTCTTTTCAAGGGCTGCAACCTGGGCATCACTCAGAATTATCCCGTCAGTAGCGACTC 482 Query 39315 GTTTTTCCAGGGCGATTAA---TCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAA 39371 | | |||||| || |||| |||| ||||| || ||||| || |||||||| | Sbjct 481 GCTCTTCCAGTGC-TTTAAGCCGCTTT--TTAAAGTTCTCAAGACCATTGCGTAACCAGA 425 Query 39372 TCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCCTTACTCACTC 39431 | || || ||||| | | |||||||||| |||| | | || ||||| ||||| || Sbjct 424 TTGACCGAACACCACTGCCAGAAACAAAGACGCCTATTCTGCGCAGTTCGTTACTAGTTC 365 Query 39432 TTACCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCT 39491 | ||| ||| || || | |||| ||| | | | || ||||| ||||| | | Sbjct 364 TGTGCTGACCATGGGCTGGCTGCTCAATGGCATAACTAATGACCGCTTGTTCTATCGTTT 305 Query 39492 CATCAACACGATTTTTTAAGTT--GGGAAC-GCGTCTATTTTGATTCAGCAATGCTTCAA 39548 |||| || |||||||| ||| ||| | ||| || || | | ||| ||| | || | Sbjct 304 CATCGACTCGATTTTTGGTGTTAGGGGTTCTGCGGCTTTTGTTAATCA--AATTC-TCGA 248 Query 39549 CACCACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTA 39608 || || | |||||| | |||| |||||||| ||||| || | ||||| | Sbjct 247 TCCCGCCATCATCAACCAGCTCACGATAGCGATAGAACGTATCCCGCGATACGCCCATGA 188 Query 39609 CTTTGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGT 39668 | ||||| |||| ||||| ||||| || ||||| |||||||||| | ||| | |||| Sbjct 187 CCTTGCATGCTTTAGAAACGTTACCGAGCTCTTCCGCTAAATTTAGCAGACCTGCTTTGT 128 Query 39669 GTTTAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGA-TTGATT 39727 ||||||||| || ||| ||| || | |||||||||| ||||||||||| || || | Sbjct 127 GTTTAATGATGGGATTGCTAGTATGGAGCATGAGAGTTACCTTTTTGTTTTGATTTAAGA 68 Query 39728 TTTGACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAG-TGAATTGTCAGATCA 39785 || ||||| | | || ||||||| ||||||| ||| || || || |||||||||| Sbjct 67 TTCGACAC-CTTTATCAAAACGGGTAACTCTCTCTTCTTCAAGAAGATATGTCAGATCA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154411159983840