Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Patiriella_20regularis_20[genbank_20GCA_5F900067625.1_202017-02-10] 3,006,458 sequences; 949,333,185 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq3002080 500 2e-137 >seq3002080 Length=1320 Score = 500 bits (554), Expect = 2e-137 Identities = 840/1196 (70%), Gaps = 23/1196 (2%) Strand=Plus/Minus Query 24397 TGTAGAAGATCAAACCTAATCTGACAGTCCCCCGTTTTAAATTACCG-TGTCTGTCAGAT 24455 ||||| || ||| || | |||||||||| |||||||| |||| | |||||| ||| | Sbjct 1193 TGTAGTAGCTCAGACTTGATCTGACAGTTACCCGTTTT---TTACTGGTGTCTGCCAGTT 1137 Query 24456 TA-ATTTGAGCTTAAATTCTTTTCCACCCAAATCCGTTTTCCATCAAGTAAGGTTGCCAT 24514 || || |||||| |||||||| || |||| ||| ||| ||||||||||| |||||||| Sbjct 1136 TAGATCTGAGCT-AAATTCTTCTCAGCCCAGATCGTTTTACCATCAAGTAAAGTTGCCAT 1078 Query 24515 CGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTATAATACATTAA 24574 || |||||||| |||||||| || || ||||| ||||| | | || ||||| | | Sbjct 1077 TGGCGTTCTGCCGCAGCACATCTTGCCCTGATGAGTTCGCTCATTGTTGTAATATTTAAT 1018 Query 24575 CCACTCATCTAAATCCGCTTGTAATGTCGTTAA-ATCCGTATAAATTTTCTTCCTAAATG 24633 ||| || || | ||| ||||| ||||||| ||| | ||| | |||||| | || | Sbjct 1017 CCATTCGTCCAGATCTTTTTGTAGC-TCGTTAATATCGGCATACAGTTTCTTGCGGAAGG 959 Query 24634 CCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCT 24693 | || || || ||||||| || || || ||||| || |||||||| || || || | Sbjct 958 TGATCTGATAGAACTCTTGTAGAATGGTCTTGTGGAAGCGCTCGCAGATCCCATTGGTTT 899 Query 24694 GCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAAATAAAGCTCAT 24753 ||||||| || | || || || | || ||||| ||||| || || ||||| |||| || Sbjct 898 GCGGATGCATTGCTTTCGTCTTCGTATGATCAATGTCATTGATCGCCAAATACAGCTGAT 839 Query 24754 AATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTAATATGCGTAACA 24813 |||| || | || || |||||||| || |||| || || || ||||| || |||| Sbjct 838 AATCATGCTGCTCAACACGACCACAATACTCCGTTCCACGATCCGTCAATATCCGCAACA 779 Query 24814 TCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCATATCCGCAGCAC 24873 ||||||| | || || ||| | ||||| ||| || || || || || || Sbjct 778 TCGGTAATTCATGTTGCTCGAAGAACGGTAATACTCGGTCGTTGAGGGCGTCGGCTGCCG 719 Query 24874 TGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAA 24933 | || | |||||| | || || | ||| || || ||||| ||||| || || | || Sbjct 718 TTATTGGTGTCTTCGTCGTGTACAATTTACAGAAGGCGACTTTGCTGTAGGTGTCGACAA 659 Query 24934 ACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTG 24993 | || || || ||||| ||||| || || ||||| |||||||| ||||| || ||||| | Sbjct 658 ATGTCTGCTGGTAAATCCGACCAACACCCTTGAGATTGCCCACGTAGAAGGTGTCTTGAG 599 Query 24994 AGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCT 25053 |||||||||| || || || ||||||||||| || || || ||||| | ||||| Sbjct 598 AGCCAAGATAACCGGGATGATGGGTTTCAATTTCCCCGCATGCTTCGTCATCATGTTTCT 539 Query 25054 TACGCTCTAAGGCTTGTACCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTT 25113 | || | |||| ||||| | ||||| || || || || | || || | | Sbjct 538 TCTTTTCAAGGGCTGCAACCTGGGCATCACTCAGAATTATCCCGTCAGTAGCGACTCGCT 479 Query 25114 TTTCCAGGGCGATTAA---TCTTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCG 25170 |||||| || |||| |||| ||||| || ||||| || |||||||| || | Sbjct 478 CTTCCAGTGC-TTTAAGCCGCTTT--TTAAAGTTCTCAAGACCATTGCGTAACCAGATTG 422 Query 25171 AACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTCTTA 25230 | || ||||| | | |||||||||| |||| | | || ||||||||||| ||| Sbjct 421 ACCGAACACCACTGCCAGAAACAAAGACGCCTATTCTGCGCAGTTCGTTACTAGTTCTGT 362 Query 25231 CCTGTCCAAATGCCGGGTTATCAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCAT 25290 ||| ||| || || | |||| ||| | | | || ||||| ||||| | |||| Sbjct 361 GCTGACCATGGGCTGGCTGCTCAATGGCATAACTAATGACCGCTTGTTCTATCGTTTCAT 302 Query 25291 CAACACGATTTTTTAAGTT--GGGAAC-GCGTCTATTTTGATTCAGCAATGCTTCAACAC 25347 | || |||||||| ||| ||| | ||| || || | | ||| ||| | || | | Sbjct 301 CGACTCGATTTTTGGTGTTAGGGGTTCTGCGGCTTTTGTTAATCA--AATTC-TCGATCC 245 Query 25348 CACCTTGCTCAACCGCTTGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTT 25407 | || | |||||| | |||| |||||||| ||||| || | ||||| || | Sbjct 244 CGCCATCATCAACCAGCTCACGATAGCGATAGAACGTATCCCGCGATACGCCCATGACCT 185 Query 25408 TGCAGGCTTGAGAAATATTACCCAGTTCTTCTGCTAAATTTAATAAACCGGTCTTGTGTT 25467 |||| |||| ||||| ||||| || ||||| |||||||||| | ||| | ||||||| Sbjct 184 TGCATGCTTTAGAAACGTTACCGAGCTCTTCCGCTAAATTTAGCAGACCTGCTTTGTGTT 125 Query 25468 TAATGAGAGGGTTGTTAGAATAAAACATGAGAGTTTCCTTTTTGTTTAGA-TTGATTTTT 25526 |||||| || ||| ||| || | |||||||||| ||||||||||| || || | || Sbjct 124 TAATGATGGGATTGCTAGTATGGAGCATGAGAGTTACCTTTTTGTTTTGATTTAAGATTC 65 Query 25527 GACACTCATATTCTAAACGGGAAACTCTCACTTTTTAGAG-TGAATTGTCAGATCA 25581 ||||| | | || ||||||| ||||||| ||| || || || |||||||||| Sbjct 64 GACAC-CTTTATCAAAACGGGTAACTCTCTCTTCTTCAAGAAGATATGTCAGATCA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110241668696696